Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01848 ATGGCGAAGGAGTTGTTGAGTCTTGAAGATGGCACAACCTGCACATCTTGGAACTACTCTGGCTCCAGACTCGCTGCGGGTTCCGCCGATGGCACGCTTTCAATCTTCGATTCCCGCCACCCACCTTCTTCTTCCTCCCTCCGCACTACTTTCAAGTCTAGGGTTGTTGAAGGAAACATCGTGAAGATTGTTTGGGTTCCACCAGAGTATGGCGATGCAGTTGCGTGTATATCTGCCGATGGAATTGTGTCATTGTGGGAGGAGGTTGCAATTGCAGAAGATTCCCAGTCTCTTCAGTGGAAGATTTGCAAAAGCTTTGGAAACAGTTCGGGCAAAGTCCTTGATGTTCAATTTGGAATCTCTTCGACTAGTTTGAAAATGGTTGCTGCATATTCGGACGGTAATGTAAGAGTTTTTGAGCTCTTGGATCCCTTGGAACTGAGAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATTGAGTCAGTGTCTGAATTTGGAAAAGCTTCATGCCTTTCTGCGTCCATATCTTGGAATCCACAAAAAGGTGGAAGCCAGGAATCCTGCTTCCTTATAGGTTTTAATTCAAATACACCAGAGCTTAATTCTTCTAAGGTATGGGAATTTGACCGGGCTCATCAAAGATGGCTTCCAGTGGCAGAACTGGCCATGCCCGAGGACAAAGGTGATCTGGTTTATGCTGTTGCATGGGCACCGAATATTGGCAGACCGTACGAGATCATTGCGGTTGCAACTCAGAAGGGAATTGCTATATGGCATCTTGGATTGAACCCTGATCACGATGGAAGGCTCCCAATAGAGAGAGTTGCACTACTGTCAGGTCATGAGGGCATGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACGTTGGCAACCACAGGTCATGATGGAATGGTCCGATTATGGCAGTCTAATCTCAATGGCGTTTGGCATCAGCAAGCTGCATTTGAACCCACTTCTTAG 987 0.4681 MAKELLSLEDGTTCTSWNYSGSRLAAGSADGTLSIFDSRHPPSSSSLRTTFKSRVVEGNIVKIVWVPPEYGDAVACISADGIVSLWEEVAIAEDSQSLQWKICKSFGNSSGKVLDVQFGISSTSLKMVAAYSDGNVRVFELLDPLELRNWQLQAEFQNVIESVSEFGKASCLSASISWNPQKGGSQESCFLIGFNSNTPELNSSKVWEFDRAHQRWLPVAELAMPEDKGDLVYAVAWAPNIGRPYEIIAVATQKGIAIWHLGLNPDHDGRLPIERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAAFEPTS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01848 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 311 IPR001680 GO:0005515
Cca06g01848 328 PANTHER NUCLEOPORIN SEH1 6 327 IPR037597 GO:1904263
Cca06g01848 328 SMART WD40_4 215 260 IPR001680 GO:0005515
Cca06g01848 328 SMART WD40_4 272 311 IPR001680 GO:0005515
Cca06g01848 328 SMART WD40_4 44 87 IPR001680 GO:0005515
Cca06g01848 328 SMART WD40_4 99 140 IPR001680 GO:0005515
Cca06g01848 328 SMART WD40_4 1 37 IPR001680 GO:0005515
Cca06g01848 328 Gene3D - 9 325 IPR015943 GO:0005515
Cca06g01848 328 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 6 327 IPR037363 GO:0005198
Cca06g01848 328 Pfam WD domain, G-beta repeat 279 310 IPR001680 GO:0005515
Cca06g01848 328 Pfam WD domain, G-beta repeat 13 37 IPR001680 GO:0005515
Cca06g01848 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 311 - -
Cca06g01848 328 SUPERFAMILY WD40 repeat-like 11 311 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01848 K14299 - gmx:100780788 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01848 06 33883485 33886592 Cca06g01848 06 33883485 33886592 ECH