Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01846 ATGATGAGGAGGATGCCGGAGCTACTTTTGTACTCCAATCAAAGGGTAACTCTTCCACCATCTCAAAGTCAATGGTGGCATGCGGGTTTTCATTTGACGACGGCGATTGTGGGTCCATCCATACTGACATTGCCTTATGCGTTCAGTGGCTTGGGGTGGGAGCTTGGTCTTTTTTGCCTAACATTGATGGGAGTGGTCACATTCTATGCTTACTACCTCATGTCCAAGGTGCTTCATCATTGTGAGAAAGCCGATCGCCGTCACATACGTTTTCGTGAACTCGCTGCTGACATATTGGGGTCGGGATGGATGTTCTATTTTGTAATCTTAATACAAACAACAATCAACTGTGGGGTTGGCGTAGGAGCAATCTTACTTGGGGGCCAATGCCTTGAGATCCTATATTCTAGTATTTCACCACACGGATCCCTGAAATTATACGAATTTATAGCAATGGTCACAGCGATAATGATAGTTCTTTCTCAGCTTCCTACTTTCCATTCCTTGAGACACATCAATTTGTGTTCGTTGCTTCTTAGTCTAGGCTACACAACGCTTGTGGTTGGTGCCTGCATTCATGCGGGTACATTGAAGAACGCACCTCCCAGAGACTACTCCTTAGAACATAAGAAGTCTGCAAAGGCTTTCAATGCCTTCACTTCCATCTCCATACTTGCAGGAATATTTGGGAATGGCATATTACCTGAGATACAAGCTACTTTAGCACCTCCAGCCGCTGAGAAGATGGTAAAAGGCCTTGGTATGTGCTATGTTGTAATTGGCACGACATTTTACACAATTGCAGTTTCTGGATATTGGGCATTTGGAAACAAGTCTAGTTCAAACATTTTTTTGAGTTTGATGCCAAATGATGGACCTTCTTTGGCTCCAACTTGGGTCCTTGGCCTTGCAGTCATCTTTGTTCTTTTCCAACTCTTTGCCATTGGTTTGGTTTATTCTCAAGTGGCTTATGAGATAATGGAGAAGAAGTCAGCTGATGTGAATCAGGGGATGTTTTCCAAAAGAAATCTTGTTCCTCGCCTAATTCTTCGAACACTTTACATGATATTATGTGGGTTTGTGGCATCTATGCTACCATTTTTCGGAGATATCAATGCCGTTGTTGGTGCTATTGGTTTCATACCTCTAGATTTCGTTTTGCCTATGCTTCTATACAATATGACATACAAGCCTCCAAAATCATCCTTCACTTATTGGGTTAACACCTCAATTATGGCAGTATTCACAGGTGTTGGAATAATGGGCGCATTCTCTTCTATAAGGAAATTGGTTCTTGATGCCAAACAATTTCAGCTCTTTGGCAATGAGGTTGTTGATTAA 1341 0.4236 MMRRMPELLLYSNQRVTLPPSQSQWWHAGFHLTTAIVGPSILTLPYAFSGLGWELGLFCLTLMGVVTFYAYYLMSKVLHHCEKADRRHIRFRELAADILGSGWMFYFVILIQTTINCGVGVGAILLGGQCLEILYSSISPHGSLKLYEFIAMVTAIMIVLSQLPTFHSLRHINLCSLLLSLGYTTLVVGACIHAGTLKNAPPRDYSLEHKKSAKAFNAFTSISILAGIFGNGILPEIQATLAPPAAEKMVKGLGMCYVVIGTTFYTIAVSGYWAFGNKSSSNIFLSLMPNDGPSLAPTWVLGLAVIFVLFQLFAIGLVYSQVAYEIMEKKSADVNQGMFSKRNLVPRLILRTLYMILCGFVASMLPFFGDINAVVGAIGFIPLDFVLPMLLYNMTYKPPKSSFTYWVNTSIMAVFTGVGIMGAFSSIRKLVLDAKQFQLFGNEVVD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01846 446 Pfam Transmembrane amino acid transporter protein 22 429 IPR013057 -
Cca06g01846 446 PANTHER GABA TRANSPORTER 2 ISOFORM X1-RELATED 15 438 - -
Cca06g01846 446 PANTHER OS05G0424000 PROTEIN-RELATED 15 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01846 Cca-Chr6 33870347 33875487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01846 21 446 Organic Solute Cotransporters AT5G41800 77.700 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01846 - - gmx:100812284 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01846 06 33870347 33875487 Cca06g01846 06 33870347 33875487 ECH