Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01845 ATGGCGTCCGGTGAGGGTGCGAAACCTCCGTCTCCCGATCTTCTCAGCATCTGCAAGTCTCTCGTTGCCGGTGGAGTTGCCGGTGGAGTGTCACGAACTGCTGTAGCTCCTCTGGAGAGATTGAAGATTCTGCTGCAGGTTCAAAATCCTCATAGTATAAAATACGACGGAACGATTCAAGGCCTAAAATACATATGGAAAACTGAGGGTTTTAGAGGAATGTTTAAAGGAAACGGAACTAATTGCGCTCGTATTATCCCAAATTCAGCAGTAAAGTTCTTTAGCTATGAGCAAGCTTCCATGGGTATTTTATGGCTCTACCAGCAGCAACCTGGAAATGAACAAGCTCAACTCACTCCTATTCTGCGTCTTGGAGCTGGCGCGTGCGCGGGAATCATTGCCATGTCTGCAACATATCCAATGGACATGGTGCGAGGAAGGCTAACCGTCCAGACAGAAGCATCTCCTCGTCAATACAAAGGAATTTTTCATGCTCTTTCAACAGTCTTCAGGGAAGAAGGCCCTCGAGCTTTGTATAAAGGCTGGCTACCTTCAGTCATAGGAGTTATACCGTATGTGGGGCTTAATTTTTCCGTATACGAGTCTCTCAAAGACTGGTTGATTCGATCTAAACCATTTGGAATAGCTCAGGACTCTGAGTTAAGTGTGACCACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTGTTGGCCAGACTGTGGCTTACCCCCTTGATGTCATTCGCCGAAGAATGCAAATGGTGGGTTGGAAAGATGCTGCTTCAGTAGTCGCTGGTGAGGGGAAGAGGAAAATGGAGTATACTGGCATGGTTGATGCATTCAGGAAAACTGTGAAGTATGAAGGATTTGGAGCATTATACAAAGGCTTAGTTCCCAATTCAGTGAAGGTGGTCCCTTCTATAGCTATTGCTTTCGTTTCATACGAGATGGCCAAGGACATTCTTGGGGCAGAAATGAGAATATCTGACTGA 990 0.4657 MASGEGAKPPSPDLLSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYDGTIQGLKYIWKTEGFRGMFKGNGTNCARIIPNSAVKFFSYEQASMGILWLYQQQPGNEQAQLTPILRLGAGACAGIIAMSATYPMDMVRGRLTVQTEASPRQYKGIFHALSTVFREEGPRALYKGWLPSVIGVIPYVGLNFSVYESLKDWLIRSKPFGIAQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDAASVVAGEGKRKMEYTGMVDAFRKTVKYEGFGALYKGLVPNSVKVVPSIAIAFVSYEMAKDILGAEMRISD 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01845 329 PANTHER SOLUTE CARRIER FAMILY 25 1 324 - -
Cca06g01845 329 Gene3D Mitochondrial carrier domain 13 324 IPR023395 -
Cca06g01845 329 Pfam Mitochondrial carrier protein 119 209 IPR018108 -
Cca06g01845 329 Pfam Mitochondrial carrier protein 220 321 IPR018108 -
Cca06g01845 329 Pfam Mitochondrial carrier protein 16 99 IPR018108 -
Cca06g01845 329 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 1 324 - -
Cca06g01845 329 SUPERFAMILY Mitochondrial carrier 13 315 IPR023395 -
Cca06g01845 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 221 320 IPR018108 -
Cca06g01845 329 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Cca06g01845 329 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Cca06g01845 329 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085
Cca06g01845 329 PRINTS Mitochondrial carrier protein signature 133 151 IPR002067 GO:0055085
Cca06g01845 329 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Cca06g01845 329 PRINTS Mitochondrial carrier protein signature 230 252 IPR002067 GO:0055085
Cca06g01845 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 118 206 IPR018108 -
Cca06g01845 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 102 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01845 Cca-Chr6 33861728 33865879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01845 21 321 EF-hand Containing Proteins AT5G51050 40.728 3.59e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01845 K14684 - gmx:100784834 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01845 06 33861728 33865879 Cca06g01845 06 33861728 33865879 ECH