Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01843 TTTGCTCTTGATCGCATTCCCAAGGGAAGAGCGGAAGACTTGTATCGCAAGTTTGTGGCCTTTGAGAAGCAGTATGGGGACAGAGAAGGTATTGAGGATGCCATTGTTGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAAGAAGAATCCGTTGAATTATGATTCCTGCTTTGACTACATAAGGTTGGAAGAGAGCGTTGGGGATAAGGAAAGGATTAGGGAGGTTTATGAGAGGGCTATAGCCAATGTTCCTCCGGCGGAGGAGAAGCGCTACTGGCAGCGCTATATCTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGCAGAACGAACTAGGGACGTATACAGGGAGTGTCTCAACCAGATACCTCACCAGAAGTTCTCGTTTGCAAAGATATGGCTTCTAGCAGCGCAGTTTGAAATACGTCAGCTGAATCTCCAGGCTGCTCGTCAAATATTAGGAAATGCCATTGGAAAGGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGGTGCAGAAAACTTTATGAAAAATATCTGGAGTGGTCTCCTGAAAATTGTTATGCATGGAGTAAGTATGCTGAATTGGAGAGATCTTTATCTGAGACTGATCGGGCAAGAGGAATTTTTGAGCTTGCAATTGCCCAACCAGCATTGGACATGCCTGAACTGTTGTGGAAGGCATACATTGACTTTGAGACTGCTGAGGGAGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTACGCAGAATTTGAGGCAACGGCTATGGATATGGACAGTGCAGACTTAGACGAACATGAACAAAAGAAGCAATGTATTCAGCATGCTAGAAGGGTGTTTGAGAAAGCTCTTACATACTTTAGATCATCAGCTCCAGATTTGAAAGAAGAAAGGGCAATGCTATTGGAGAAATGGCTCAACATGGAGGCTTCGTCTGGAGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGGCAAGTTGCCACTGAAGACGGTTCTACTAGAATTGAAGAATTCATCGACTATTTATTCCCAGAGGAAACCCAGACAACAAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAAAGGCAAAAATTGTCTTCTGATGATGATTAA 1233 0.4274 FALDRIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVKKNPLNYDSCFDYIRLEESVGDKERIREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDAERTRDVYRECLNQIPHQKFSFAKIWLLAAQFEIRQLNLQAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETDRARGIFELAIAQPALDMPELLWKAYIDFETAEGEFERARALYERLLDRTKHLKVWISYAEFEATAMDMDSADLDEHEQKKQCIQHARRVFEKALTYFRSSAPDLKEERAMLLEKWLNMEASSGELGDVSLVQSKLPKKLKKRRQVATEDGSTRIEEFIDYLFPEETQTTNLKILEAAYKWKRQKLSSDDD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01843 410 Coils Coil 248 268 - -
Cca06g01843 410 SUPERFAMILY TPR-like 6 237 IPR011990 GO:0005515
Cca06g01843 410 PANTHER - 1 409 - -
Cca06g01843 410 SMART hat_new_1 183 215 IPR003107 GO:0006396
Cca06g01843 410 SMART hat_new_1 301 334 IPR003107 GO:0006396
Cca06g01843 410 SMART hat_new_1 217 251 IPR003107 GO:0006396
Cca06g01843 410 SMART hat_new_1 150 181 IPR003107 GO:0006396
Cca06g01843 410 SMART hat_new_1 253 284 IPR003107 GO:0006396
Cca06g01843 410 SMART hat_new_1 112 148 IPR003107 GO:0006396
Cca06g01843 410 SMART hat_new_1 68 102 IPR003107 GO:0006396
Cca06g01843 410 PANTHER PRE-MRNA SPLICING FACTOR 1 409 IPR045075 GO:0000398
Cca06g01843 410 Gene3D Tetratricopeptide repeat domain 43 195 IPR011990 GO:0005515
Cca06g01843 410 Gene3D Tetratricopeptide repeat domain 196 380 IPR011990 GO:0005515
Cca06g01843 410 SUPERFAMILY TPR-like 240 341 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01843 Cca-Chr6 33847834 33851589 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01843 K12869 - gmx:100811745 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01843 06 33847834 33851589 Cca06g01843 06 33847834 33851589 ECH