Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01831 ATGCACTCTCACTCCCACACCTTGCTTCGCCCACATTCAttcccttcctttcccaaaccatttcccttctcttcttttcctcttcttcttcctccttccactctccgctcctcaactttcGCCACCACTTCTGCAATTTCCCCTAATGAAACCAAATTCCCTACGCAGCGACTCACTCGTGCTTGCAACAATTCGCGCCAATCCCTTGCTTCCATCTCCAATGGCAAATTTCCCTTTCTTTCTTCTTCTAATGATGCTAGTGCTACTACTAATTTATCCACCAGCCTTCTCAAGTTTTCGTTGCTCTTCGGCTTCCTCACTCTTCAAGACTCTTATCCAGCGCTTGCTGCTTCCGACATTTCCACTTCTTTCAATTCATTTCCTATATTTGGGGATATTGGTGACTTAAGCACAGGTTTTGCTTCAGCGTTTCTGCTGATATTTTTCTCTGAACTGGGAGATAAGACATTTTTCATTGCAGCGCTGCTTGCAGCTAGGAACTCAGCTGGTGTGGTTTTCATTGGGACATTTGGCGCGCTTGCGGCAATGACTCTGATATCCGTTGCCCTTGGACGAACTTTTCATTATGTTGATGAAATCTTGCCATTCAGGTTTGGAGAAACTGATTTACCTATTGATGATATTGCTGCTGTTTGCCTATTGGTGTACTTTGGGGTCTCTACTTTGCTGGATGCCTCATCTAGTGATGGCCAAAAATCAGATGAAGAGCAGAAGGAGGTAATATTTGGTATCTATTTATCTATAGCGGTGTGCTGGATACAATTCAATGTTTCCATTCTTAACCAGGCAGAGCTAGCAGTTTCTGATTTTTCTGGAAATGGTGCTGGGATACTATCTGCTGCTAGCACAGTTGCCAGTACTTTTCTCTTAGTTTTTGTTGCAGAATGGGGCGACAAGTCATTTTTCTCCACAATTGCCCTTGCAGCAGCTTCTTCTCCCCTTGGAGTCATAGCTGGAGCACTGGCCGGTCATGGCGTTGCGACTTTGCTAGCTGTGCTTGGGGGCTCTTTATTGGGGAGTTTTTTGTCAGAGAAGGTTATTGCCTACATCGGAGGTGTTCTCTTTCTCGTCTTTGCTGCAGTAACCTTATTTGAAATTGTGCAATAG 1128 0.414 MHSHSHTLLRPHSFPSFPKPFPFSSFPLLLPPSTLRSSTFATTSAISPNETKFPTQRLTRACNNSRQSLASISNGKFPFLSSSNDASATTNLSTSLLKFSLLFGFLTLQDSYPALAASDISTSFNSFPIFGDIGDLSTGFASAFLLIFFSELGDKTFFIAALLAARNSAGVVFIGTFGALAAMTLISVALGRTFHYVDEILPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDGQKSDEEQKEVIFGIYLSIAVCWIQFNVSILNQAELAVSDFSGNGAGILSAASTVASTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGVATLLAVLGGSLLGSFLSEKVIAYIGGVLFLVFAAVTLFEIVQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01831 375 PANTHER PROTEIN PAM71, CHLOROPLASTIC 267 375 - -
Cca06g01831 375 Pfam Uncharacterized protein family UPF0016 142 225 IPR001727 -
Cca06g01831 375 Pfam Uncharacterized protein family UPF0016 293 366 IPR001727 -
Cca06g01831 375 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 63 247 IPR001727 -
Cca06g01831 375 PANTHER PROTEIN PAM71, CHLOROPLASTIC 63 247 - -
Cca06g01831 375 ProSitePatterns Uncharacterized protein family UPF0016 signature. 151 160 IPR001727 -
Cca06g01831 375 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 267 375 IPR001727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01831 Cca-Chr6 33711576 33716021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01831 - - gmx:100809618 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01831 06 33711576 33716021 Cca06g01831 06 33711576 33716021 ECH