Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01821 ATGAACACTTCGTCGGCGTTGCCTCTGCTACCAGATACGTCGCCGTCTACGGTGAACATGTATAGAATCAGCAAAGTTGCGGACCGGTTGGCTTGGCTTGCTCAAACTGGCAGCCGAGGCGACCACCCTTACGAATTTTATAATCTCTGTCTCTCCCTCTCTCGAGGCATTGATTATGCAGTTGCCAATGGCGAAAATCCGGCCAAAGCTCATGATCTGCCTCTACTGGTGAAACAGATTTGTAAGCTAAAGAATGATGAATTATCACAAGCAGCTATGATGGTGTTGATGATATCTGTAAAGAGTGCTTGTGAAATTGGATGGTTCCAAACAAAAGAGTCAGAAGAACTTGTTACTATTGCTGATGAGATAGGAAAGGTCTACAGCAGCTCGGGGATTTTAAATGCTGGACCTAGTTCTTGCAGTTCTGCGATACCAACAATAATGGAGAAGTTCTATCCAAAGATAAAATTAGGTCCAATACTTACGTCAATTGATGCCAAGCCAGGATATGGAGCTTTTGCTGTTGACTTCCATATTACGAAGAATAAAGTTCTAAAAGATAAAATTTATTTATTGGTGGCACAAACAGATAACATTGAGACATCTACATGCCTCATAAGTCCTCAGCAAGTGAATTTTCTCCTCAATGGAAAAGCGGTAACCAATAGAACTAATGTTCAAATGGATCCTGGACCACAGATGCCAACTAATGTGACTGGTATGCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGCCAGTTCAATAGTCATTATATTGTACTTGTTGCCTATTTGAGTGTTGCATCTTTGCCTGAGGATCCAGTTCTTCAAGATTATTTGCAGCCTACTGTTACCTCTGTTGATTCAGATTCAGATATTATCGAGGGGGCTTCGCAAATTTCACTTAATTGTCCAATAAGCTTTACACGTATCAAGACTCCTGTTAAAGGGCGTTCATGCAAACATTTCCAGTGTTTTGACTTTGACAACTTCATTAGTATGAATTCAAAAAGGCCATCCTGGCGCTGCCCTCATTGCAATCAGTATGTCTGTTATGCAGATATTCGTCTTGACCGAGTCATGGTTGAGATCCTGAAAAATGTTGGTGAAAACATTACGGAAGTGATTGTCCTTGCTGATGGATCATGGAAGGCAGTCTTGGAAAAGGATCGTGATGTGGATAAGATGCAGAACAAGGCCCCCAATTGTGAAAAGGAACAAACTGAGCCGCAAGAATCTACTTGCTCTCCTAGTACTGTTGACCTCACCAAAGATGATGATTGTTTGGAGATAATGGACTCTTGTGAAATTGCAGATAGAAAACCTTTCCAGGCATCTGTTCATAGTCAGTTTGTTACCCCAAATTCAACTTCCTTGGGTATGAACTCTACTGGTATTAATCAAAATGTTGCCGCCCAAATAGAAGATGACTTTTGGTCTGGAATTTATGTTACCGGTGGTTCTGAGCTACCTGTTCTTCCTGATACTGTTTCTCCTGCATTTAATCAGGAACCTGCAGGTCGTGACAATAACCCTGTTGTTAACTCTGCCATGCACAATTCATTTTCGGCAACAAACAATTTGCAGATGCAGTTGAATCACATGAATTCGGTTAATGAGTATGGGAGGTCATCTTCAATGCCAAGAATTAATAGGACTCCGGTAGCTGTTCAGGCCCTCCCTGTCCAATCTCAGGCATTGGGGCCACAGCAAAATTCAATAACTAATTTGAATAATTCCGCTGCTACTCCTCATATTAATTTGTCTAACCCAGCCTCTGTAGATGCTATCAGTGCCATACTGAGTGATACGGAAAGACAGCAACATTTTTCTCGATCCCCAAGGAATCTGCCTCAGGTCTCGGGAGTAAATTCAACTGCATTTCAGCATCATTCTGCAACACAGAATCGGGTACCACTAGTTAATACATCAGCATCAACTCTATTGCAGAACCCATACAGAGGTAGGTCGTTTTCTGAATTTAAAAATCCACATCTGCAGCAAGCTCTGAATCCTCGGCCGCCTCAACAGCAAGCTCTGAATCCTCGGCCGCCTCAACAGCAAAGTCTGAATTCCCGGCCACCCCAACAGCAAAGTCTGAACTCTCGGCCACCCCCACCAACGAGATCATCTAATGATAGCCAATGGTCCCACATTCAGCAAGGTGTCTCACAATCTGGGATTTTTCAGAGTGCCATAGCTGCTGCACCAGGTGCCAGACAAGGTGGTTCCCAAGGTAGGAGTGTTCCTACAGCTGGAACTAGGTCTATGGTTTCTAACCAGCCAGCCAGACCATCGCCAGCAGTTTCAGCTCAAAATCAAAGTACCGTCACAAGCACATCTTTTGCAACTGACAGTTTCCAGAAGTTGACAGGAGAGCAAAGAGGAAATCCACCACAGGCCGTTTCTAGGCCTGATGAATTATTCAGTATGCAAGCAGAACAAAATTGGGTTCCCACTGGACGAATGCGTGGAAGTCTAGATTTAAGTCAGCATTATGATGATTCAATTACGCAGCGAATAATTGcaccaacacaacaacaacaacaaaatcaaAGTTCAAGGCAACATGTTCCACAACCTGTCCGACGGATCAGTGGGCCGTCCCAACTGGATGTGCTTACTGCAAACAATAGAAATGCAAATGCTCATAATCGTTCTTCCAGTAGGTAA 2679 0.4285 MNTSSALPLLPDTSPSTVNMYRISKVADRLAWLAQTGSRGDHPYEFYNLCLSLSRGIDYAVANGENPAKAHDLPLLVKQICKLKNDELSQAAMMVLMISVKSACEIGWFQTKESEELVTIADEIGKVYSSSGILNAGPSSCSSAIPTIMEKFYPKIKLGPILTSIDAKPGYGAFAVDFHITKNKVLKDKIYLLVAQTDNIETSTCLISPQQVNFLLNGKAVTNRTNVQMDPGPQMPTNVTGMLKFGTNLLQAVGQFNSHYIVLVAYLSVASLPEDPVLQDYLQPTVTSVDSDSDIIEGASQISLNCPISFTRIKTPVKGRSCKHFQCFDFDNFISMNSKRPSWRCPHCNQYVCYADIRLDRVMVEILKNVGENITEVIVLADGSWKAVLEKDRDVDKMQNKAPNCEKEQTEPQESTCSPSTVDLTKDDDCLEIMDSCEIADRKPFQASVHSQFVTPNSTSLGMNSTGINQNVAAQIEDDFWSGIYVTGGSELPVLPDTVSPAFNQEPAGRDNNPVVNSAMHNSFSATNNLQMQLNHMNSVNEYGRSSSMPRINRTPVAVQALPVQSQALGPQQNSITNLNNSAATPHINLSNPASVDAISAILSDTERQQHFSRSPRNLPQVSGVNSTAFQHHSATQNRVPLVNTSASTLLQNPYRGRSFSEFKNPHLQQALNPRPPQQQALNPRPPQQQSLNSRPPQQQSLNSRPPPPTRSSNDSQWSHIQQGVSQSGIFQSAIAAAPGARQGGSQGRSVPTAGTRSMVSNQPARPSPAVSAQNQSTVTSTSFATDSFQKLTGEQRGNPPQAVSRPDELFSMQAEQNWVPTGRMRGSLDLSQHYDDSITQRIIAPTQQQQQNQSSRQHVPQPVRRISGPSQLDVLTANNRNANAHNRSSSR 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01821 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 387 IPR013083 -
Cca06g01821 892 Pfam MIZ/SP-RING zinc finger 302 350 IPR004181 GO:0008270
Cca06g01821 892 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 23 598 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 399 421 - -
Cca06g01821 892 CDD SP-RING_PIAS_like 303 350 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 737 782 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 668 725 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 846 862 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 846 892 - -
Cca06g01821 892 ProSiteProfiles Zinc finger SP-RING-type profile. 291 372 IPR004181 GO:0008270
Cca06g01821 892 PANTHER E4 SUMO-PROTEIN LIGASE PIAL2-LIKE 23 598 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 872 892 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 607 641 - -
Cca06g01821 892 MobiDBLite consensus disorder prediction 746 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01821 Cca-Chr6 33623709 33636682 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01821 K04706 - gmx:100784204 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01821 06 33623709 33636682 Cca06g01821 06 33623709 33636682 ECH