Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01819 ATGGGGTACAATTTTGTGTTCATTGGTGTGTTATTTTGTTGTGCCATGGTTAGTCACAATGGTCTAGCGGCGACGGAAGCCAATAATTATGACTATGCAGATGCTGTTGGCAAAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCCACCAGCCAAAGAGTGAAGTGGAGGGGAGACTCGGCTCTATCAGATGGCAAACTTCAAAATGTGAATTTGATTGGTGGATACTACGATGCTGGTGACAACGTGAAGTTTGGATGGCCTATGGCATTTACAACCACCTTGTTGAGTTGGTCTGCTGATGAGTATAAGAGTGAGATATCTTCGGTCAACCAACTTGGCTACCTCCACAGTGCTATCCGTTGGGGTGCAGACTTCATATTAAGAGCCCACACTTCCCCAACTACCCTCTATACACAGGTTGGAGATGGAAACTCCGATCACCAATGTTGGGAGCGACCGGAAGACATGGATACACCAAGAACGGTCACCAAGATAGATGCTAATTCCCCAGGAACTGAAgctgcagccgagtctgctgctgctctttctgctgcttctgttgTCTTCAAGAAAATAGATGCCAATTATTCCTCCACGCTGCTAAGCCAGTCAAAATCACTGTTTGAATTTGCGGACAAGCACAGAGGTACTTACTCGGGTTCTTGCCCGTTCTATTGCTCGTACTCAGGTTACCAGGATGAATTGCTATGGGCTGCTTCTTGGCTATATAAGGCGAGTGGAGAAAGCAAGTACTTGAGCTACATCATTGGCAACCAAGGTTGGAGTCATGCGGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGGGCTCAGACATTACTAACGGAGGAATTCTATGGTGGGAAGAAAGACTTGGCGAAGATTAAGAGTGACGCAGAATCATTTATATGTGCAGTGATGCCAGGAAGTAGCTCTGTACAGATTAGAACAACTCCTGGTGGGCTTCTGTTTACTAGGGATAGTAGTAATTTGCAATATGCCACGAGCTCAACCATGGTGCTATTCATTTTCTCCAAAATTCTAAACAGAAATCATATTAATGGAATCCAGTGTGGCTCCGCGCATTTCACCCCCTCCCAAATTAGAGCCTTTGCCAAAACACAGGTGGACTACATACTAGGAAACAATCCGACGAAGATGTCGTACATGGTGGGATTTGGCAGTAAATATCCAAAGCAATTGCATCACAGAGGCTCATCCATTCCTTCAATCCAAGTTCACTCAGCGAAGGTGGGTTGCAATGACGGTCTCTCAGACTATTACAATTCTGGTAATCCAAATCCCAATACTCATGTGGGTGCCATTGTTGGAGGCCCTGATTCAAATGACAAATTCAATGATGCAAGATCTGACTTTTCTCATAGCGAGCCTACAACATATATGAATGCTGCTTTCGTGGGCTCAGTGTCTGCTTTGCTTTAG 1455 0.4351 MGYNFVFIGVLFCCAMVSHNGLAATEANNYDYADAVGKAILFFEGQRSGKLPTSQRVKWRGDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFTTTLLSWSADEYKSEISSVNQLGYLHSAIRWGADFILRAHTSPTTLYTQVGDGNSDHQCWERPEDMDTPRTVTKIDANSPGTEAAAESAAALSAASVVFKKIDANYSSTLLSQSKSLFEFADKHRGTYSGSCPFYCSYSGYQDELLWAASWLYKASGESKYLSYIIGNQGWSHAVSEFSWDNKFVGAQTLLTEEFYGGKKDLAKIKSDAESFICAVMPGSSSVQIRTTPGGLLFTRDSSNLQYATSSTMVLFIFSKILNRNHINGIQCGSAHFTPSQIRAFAKTQVDYILGNNPTKMSYMVGFGSKYPKQLHHRGSSIPSIQVHSAKVGCNDGLSDYYNSGNPNPNTHVGAIVGGPDSNDKFNDARSDFSHSEPTTYMNAAFVGSVSALL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01819 484 PANTHER ENDOGLUCANASE 18-RELATED 5 484 - -
Cca06g01819 484 Pfam Glycosyl hydrolase family 9 32 478 IPR001701 GO:0004553|GO:0005975
Cca06g01819 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 456 474 IPR033126 -
Cca06g01819 484 Gene3D - 26 484 IPR012341 GO:0005975
Cca06g01819 484 SUPERFAMILY Six-hairpin glycosidases 28 483 IPR008928 GO:0005975
Cca06g01819 484 PANTHER ENDO-1,4-BETA-GLUCANASE 5 484 - -
Cca06g01819 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 382 408 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01819 Cca-Chr6 33600441 33604442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01819 22 484 Glycoside Hydrolase AT4G23560 71.706 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01819 - - gmx:547834 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01819 06 33600441 33604442 Cca06g01819 06 33600441 33604442 ECH