Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01818 ATGGAAATGTGCTATCAGATATTGCTTCAGGAAAAGCGTGTCACACAGAGGGAGCTCTTCTACAAGATGTTGTGTGATTCGCCATACCTGTTTCCTTCTCAAACCCATGTCAATAGGACCATCCAAGATCTTGTAGCATTGCTTCGGTGCAGCCGTTACAGTCTTGGAATCATGGCATCTAGTCGAGGACTCGTTGCTGGGCGTCTGATTTTGCAGGAACCGGGCAAAGAGGCTGTCGATTGCTCTTTATGTGGTTCTTCTGGATTTGCAATTTCTGGTGACTTGAATTTGTTAGACAATTTGGTTCTAAATTCTGATGCTCGGTACGTTATGATTGTGGAAAAGCATGCAATATTTCAGCGGCTTACTGAGGACCGGTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCTAAGGGTTACCCAGATATGGCCACAAGATTTCTTTTATATCGAATCAGTCGAGCTTTTCCAGACTTGCCAATTTTAGCTTTGGTGGATTGGAATCCAGCTGGGTTAGCTATTCTATGCACCTTCAAGTTTGGAAGCGTAGGAATGGGCCTGGAGGCATACAGATACGCTTGCAATGTCAAATGGCTAGGACTGCGGGGACATGATCTACCTTTGCTGCCAGACCAATCTTTCGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTCAAAGCTTGATGTCCTCGGGAATGTTACAGGATAATTACAAGGAAGAAGTGGCTTTAATGGTCCAGAGCGGAAGGAGAGCTGAAATCGAGGCCCTTTACTTTCATGGATATGATTATCTGGGGAAGTACATAGCTAAAAGAATTGTACAGTCCGATTATGTATAA 843 0.4377 MEMCYQILLQEKRVTQRELFYKMLCDSPYLFPSQTHVNRTIQDLVALLRCSRYSLGIMASSRGLVAGRLILQEPGKEAVDCSLCGSSGFAISGDLNLLDNLVLNSDARYVMIVEKHAIFQRLTEDRFFHQIPSILITAKGYPDMATRFLLYRISRAFPDLPILALVDWNPAGLAILCTFKFGSVGMGLEAYRYACNVKWLGLRGHDLPLLPDQSFVPLKPKDLQIAQSLMSSGMLQDNYKEEVALMVQSGRRAEIEALYFHGYDYLGKYIAKRIVQSDYV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01818 280 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 1 279 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca06g01818 280 PRINTS DNA topoisomerase VI subunit A family signature 34 51 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca06g01818 280 PRINTS DNA topoisomerase VI subunit A family signature 134 155 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca06g01818 280 PRINTS DNA topoisomerase VI subunit A family signature 52 67 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca06g01818 280 PRINTS DNA topoisomerase VI subunit A family signature 167 183 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca06g01818 280 PRINTS DNA topoisomerase VI subunit A family signature 110 127 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cca06g01818 280 SUPERFAMILY DNA topoisomerase IV, alpha subunit 2 280 IPR036078 GO:0003677|GO:0005694
Cca06g01818 280 Gene3D - 61 280 - -
Cca06g01818 280 CDD TOPRIM_TopoIIB_SPO 108 265 IPR034136 -
Cca06g01818 280 Pfam Type IIB DNA topoisomerase 1 57 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cca06g01818 280 Gene3D - 1 60 IPR036388 -
Cca06g01818 280 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 1 279 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01818 K10878 - gmx:100784732 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01818 06 33596747 33599461 Cca06g01818 06 33596747 33599461 ECH