Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01817 ATGGCGGCAACTTCCATTACTGCATCTTCCATCCTCTTCCCATTCACAACAACCACACCCAAACCCTCTCAGCGGTTTCTCTCCTTTCCTTGCCAACACCACACCCTCCGTCTCTCAgcctctgcctctgcctctgcctctgcGGCTTCAACTCCGACCCCCTCCATCCAAATCGAGAAATCCGCAGCCAGCACCACCCCCTCCAAGGCCCTTCCCTTTCGCGTCGGCCACGGCTTTGACCTCCACCGATTGGAACCCGGTTACCCCCTAATCATCGGCGGAATCAACATACCCCACGACAGAGGCTGCGAGGCTCATTCCGATGGGGACGTTCTCCTTCACTGCGTCGTCGATGCCATTCTCGGGGCCTTAGGTCTTCCTGATATTGGCCAGATATTTCCCGATTCCGATCCCAAGTGGAAGGGTTGTGACTCTTCCGTCTTCATCAAAGAATCTGTGAGACTTATGCATGAGGCTGGTTATGAGATTGGAAATTTAGATGCTACATTGATACTTCAGAGGCCAAAACTAAGCCCACACAAGGATACTATCAAGGCCAACTTATCTGCATTGCTTGGAGTGGACTCTTCTGTAGTAAATATCAAAGCAAAAACTCATGAGAAGGTAGATAGCCTTGGAGAAAATAGAAGCATAGCGGCTCACACAGTGGTTCTTCTAATGAAGAAATGA 690 0.4812 MAATSITASSILFPFTTTTPKPSQRFLSFPCQHHTLRLSASASASASAASTPTPSIQIEKSAASTTPSKALPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIKESVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKANLSALLGVDSSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01817 229 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 3 229 IPR003526 GO:0008685|GO:0016114
Cca06g01817 229 SUPERFAMILY IpsF-like 72 228 IPR036571 GO:0008685|GO:0016114
Cca06g01817 229 CDD MECDP_synthase 74 226 IPR003526 GO:0008685|GO:0016114
Cca06g01817 229 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 107 122 IPR020555 GO:0008685
Cca06g01817 229 Gene3D - 70 229 IPR036571 GO:0008685|GO:0016114
Cca06g01817 229 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 74 228 IPR003526 GO:0008685|GO:0016114
Cca06g01817 229 Pfam YgbB family 73 226 IPR003526 GO:0008685|GO:0016114
Cca06g01817 229 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 3 229 - -
Cca06g01817 229 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 73 228 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01817 K01770 - gmx:100306378 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01817 06 33591365 33594043 Cca06g01817 06 33591365 33594043 ECH