Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01763 ATGGACGATGATCTTTTCCATAAGCACAAAGCGCCATCTGGTGTCATAAAAGCAATAAAGTTTGATGTCCTAACTAAAGAAGATATAGAGAAAATATCTGTTTTGGAGATAGAGGCAGTTGGTCAGGTCACTTGTTCAAGTTTGGGACTTCCAAATCAATCTGATGAGTGTGCAACATGTGGTTCGAAAGAGAAAAAAATGTGTGAAGGTCATTTTGGAATAATCAGATTTCCTTTTTCCATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAACAGGATTTGCCCTGTTTGTAAATCTATTCGTCATGAATCCAAGGGTGCTAAATTAATCTTTGGTATTGGTTGCAAATATTGTTCTGGAAATGGTATGGGTCGATATCCAACAATGAAATTTAGAGTTTCCTCCAATGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGCAAATGATAAGGCTTCAAAGAAGAGAACTTTAGGGCGAGGACTGCCTGCTGATTATTGGGATTTTATTCCTTATGATGCTCAACAAGAAGAAAGTTATGTAAATAGAAGGGTTTTATCACCTGGGCAGGTTTTTTCTTTGTTGAAGGATGTCGATCAAAACATTATTGAAAAATATATTCCAAGAAAGAATTTGCTCTCTCTTGATTGCTTCCCGGTGACTCCAAATTGTCATCGGGTGACTGAAGTCCCTTATGCAATTTCCAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGCACAACCAATGAATTAGGTTCACGTGTTTTGGACTGCCTGAGGATCTCTAAGCTCAATCCTGATAAAACACCAACTAGTATTTTTGCTGATATCCAGCAAAGAAAGGTTGCAGAAAATGCTTTCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACATTCCGTACTGTGGTTGTTGGTGATCCGGATCTTGAGCTTAGTGAAATTGGTATACCTTGTCAAATTGCCGAAAGTTTGCAGGTTTCTGAGTATGTGAACAGGCAGAATAAGGAAAAGCTGCTTTATTGTTGTGAGCTACGTTTGTTAGAGAAGGGACAGATAAATGTCAGCAGAAAGGGTAGTTCAGTTCTTCTATATAAAAAGGAAGATCTACAAGTCGGAGACATATTTTATAGGCCTCTTACTGATGGGGATAAAGTGCTCATAAATAGGCCCCCTTCCATACACCAACATTCTATGATTGCTCTCACAGTTAGGGTCCTTCCTATATCTTCTGTAGTGTGTATTAATCCACTCTGTTGTTCCCCACTGCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAACTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAGAGTGGTAGAAATCTACTTTCTCTCTCTCAGGATAGTTTAACCGCCGCATATTTGCTAATGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAACTACAAATGTTTTGTAACAAAAGATTAACACCTCCTGCATTTGTAAAAGCTCCTTCATGCAATAGTGCATTTTGGAGTGGAAAGCAATTGTTCAGCATGCTCTTGCCTTCTGATTTTGACTACTCTTTTCCTTCAGATGGTGTTGTTGTGAGTGACGGGGAGCTTGTATCTTCTTCTGAGGCTTCTGGTTGGTTACGTGATTCTGATTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGGAAGACTCTGGACTTTTTGTATGCTGCGCAGAAAGTTCTCTGTGAGTGGCTGTCTATGACAGGTTTTAGTGTTTCACTCTCAGATTTGTACCTTTCTTCTGATTCCTATGCACGAAAAAACATGATGGAGGAAATCACTTATGGCATACAAGATGCAGAAAAGGCATGCAATTTCAAGCAGCTATTGTTGGAATATTATTGTGATTTTCTGTCAGGAAGTCTTCAAGAGAGTGAAAGTGCTATGACTGTTGATGCAGATCGTCTGAATTATGAAAGACAAATATCTGCTACTCTCAGTCAAGTGTCAGTTGATGCTTTTAGACAAGTTTTTCGCAATATTCAAAGTTTAGCTGATAAATATGGATGTAAGAACAATACTTTCCTTGCTATGATTAAGGCTGGAAGCAAAGGTAATTTGGTGAAATTAGTGCAACATTCCATGTGCCTTGGCCTGCAAAATTCTCTGGTTCGCTTGTCATACAGACTACCCCGTCATCTTTCATGTACTGCTTGGAATAGTCTAAAGGGGCTTGATTCACTCCAGTTGTTTTCTGGTACCCTTGAATCTGTTCAGTCTTACATTCCATATGCTGTGGTTGAAAGCTCATTTTTAACCGGGTTGAATCCACTTGAATGTTTCGTTCATTCAGTTACAAATCGTGATAGCTCTTTCAGTGACAATGCAGATCTTCCTGGAACATTGACGCGTAGACTTATGTTCTTCATGCGTGATTTGTATAATGCATACGATGGAACAGTAAGAAATTTGTATGGTAATCAACTAGTTCAGTTTTCTTATGATATTGAGGAGGAGTCTTCATGTGATGAAAGTTTCCAAGAGTACACTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTGTGCGATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTACTTGAAACATCGCCTTTACTAAATTTGAAAAATGTTCTGGAGTGTGGCTCAAGGAAAAAAAATGGTGACCAGACTGTATCTTTATTTTTGTCTGAGAAGCTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTCTAGAAGTTAAGAATTATTTGGAAAGATTGTTGTTCTCAAGCATTGTTTCTTCGGTAATGATAATATTCACCCCACATGACAGAAGCAGCCTAGAAAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTGTAACGAGAAGAAAGTTGAAAGTGCATTCTATCATCGACTCTCTTTACCAGAGATATTACTCCCTGACAAAAGAATCAAAAGTTTATTTTACCAATTTGAAAATATCAAGCAAGAAGTGTTCTGCTGATTCAATGGCTGAAGAAGGTGAAGACAATTCTATTGATAAAGAAGGTGATGATTGCATCACCGTCACAATTGTTGAAAACTCTAAGAATCCTATACAACTGGATTCGGTTCGAGACTCGGTGTTACCTTTTCTTTTAGGAACAGCTATAAAAGGATTTCTGGACATCAAGAAGGTTGATATTCTCTGGAATAATATGTCAAAAGCAACAAATTCTTATCATAGTTCTTCTGGTGAACTGTACTTGAGGGTTACTATGTCCAGTGAGGGTAACAGTGGAAGATTCTGGGGTGTACTCAAAATTCACTGTCACAAGATAACACAGATAATTGACTGGACGCGAAGTCACCCAGACAACATAAATCATTTCTCATCAGCCTATGGAATTGATGCAGGGTGGCAATATTTTCTCAATAGTTTGGCATCTGCAACATCTGATACTGGCAAGTCAATCCTTTGTAAGCATCTGTGTCTTGTTGCCAATAGTCTGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCAAAGCAAAGAAAACATGCGTCTGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTGGTTGCTTTATAAAAGCTGCCAAGTCTGGAGTCATGGATAATCTCCAGGGCAGCATAGATTCGTTTGCTTGGGGAAACTGTCCATCTATGGGGACAAGTGGACTGTTTGATATCGTATATTCTGAGAAGGGACATGAGGTAGCTAAGTCTGCAGACGTATATGACCTTCTAGAAGCCAGTTTCGACAAGCTGAACAATAAGATTGGTACTCATTCTCTCAACTATTCATCTGACAAATGCGGTTCTGAATTTAGGCATAAAGATGGTTATGCCTTGAAAGAGACAAAACAGTGGAAAAACGTTGTAAGAAATTTTGTGACGGTAAATGATATTCAGAAGCTGACTTCTGCATCGAGGTGCATATTGAACAAGTATTCGATTGATGACCTGCTAAGTGAGAGTGACAGGTCAATAATGCTAAGGGTTTTGCATTTTCATCCTCGTAGAAGTGAGAAGTTTGGCACTGGACCACAAGACATTAAGGTTGGGCGGCATCCTATATTTAAGGATAGCCGCTGCTTCCATATTGTACGAACTGATGGGACTGTTGAAGACTTTTCATACCGCAAATGCATTCTTGGGGCTCTAGAGATTGTTGATCCAAAAAAGTCAAAGATCCAGAAGAAAAAATGGTCGGGAGATGGTGACACACATGCTATATCTATGCATAATAAGTGA 4401 0.3906 MDDDLFHKHKAPSGVIKAIKFDVLTKEDIEKISVLEIEAVGQVTCSSLGLPNQSDECATCGSKEKKMCEGHFGIIRFPFSILHPYFMSEIAQILNRICPVCKSIRHESKGAKLIFGIGCKYCSGNGMGRYPTMKFRVSSNDLFRRTAIIVEANDKASKKRTLGRGLPADYWDFIPYDAQQEESYVNRRVLSPGQVFSLLKDVDQNIIEKYIPRKNLLSLDCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTTNELGSRVLDCLRISKLNPDKTPTSIFADIQQRKVAENAFNSSGLRWIKDVVLGKRNDSTFRTVVVGDPDLELSEIGIPCQIAESLQVSEYVNRQNKEKLLYCCELRLLEKGQINVSRKGSSVLLYKKEDLQVGDIFYRPLTDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMFCNKRLTPPAFVKAPSCNSAFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDCNVFQSLVEHFQGKTLDFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEITYGIQDAEKACNFKQLLLEYYCDFLSGSLQESESAMTVDADRLNYERQISATLSQVSVDAFRQVFRNIQSLADKYGCKNNTFLAMIKAGSKGNLVKLVQHSMCLGLQNSLVRLSYRLPRHLSCTAWNSLKGLDSLQLFSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLYNAYDGTVRNLYGNQLVQFSYDIEEESSCDESFQEYTIGGEPVGALSACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKKNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSSIVSSVMIIFTPHDRSSLEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSLTKESKVYFTNLKISSKKCSADSMAEEGEDNSIDKEGDDCITVTIVENSKNPIQLDSVRDSVLPFLLGTAIKGFLDIKKVDILWNNMSKATNSYHSSSGELYLRVTMSSEGNSGRFWGVLKIHCHKITQIIDWTRSHPDNINHFSSAYGIDAGWQYFLNSLASATSDTGKSILCKHLCLVANSLSASGEFVGLNAKGMAKQRKHASVSSPFVQACFSNPGGCFIKAAKSGVMDNLQGSIDSFAWGNCPSMGTSGLFDIVYSEKGHEVAKSADVYDLLEASFDKLNNKIGTHSLNYSSDKCGSEFRHKDGYALKETKQWKNVVRNFVTVNDIQKLTSASRCILNKYSIDDLLSESDRSIMLRVLHFHPRRSEKFGTGPQDIKVGRHPIFKDSRCFHIVRTDGTVEDFSYRKCILGALEIVDPKKSKIQKKKWSGDGDTHAISMHNK 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01763 1466 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 10 1282 - -
Cca06g01763 1466 Pfam RNA polymerase Rpb1, domain 3 479 627 IPR007066 GO:0003677|GO:0003899|GO:0006351
Cca06g01763 1466 Gene3D RNA polymerase Rpb1, domain 3 483 624 IPR042102 -
Cca06g01763 1466 Pfam RNA polymerase Rpb1, domain 4 690 756 IPR007083 GO:0003677|GO:0003899|GO:0006351
Cca06g01763 1466 Gene3D - 1343 1435 - -
Cca06g01763 1466 Gene3D RNA polymerase II, clamp domain 7 115 IPR044893 -
Cca06g01763 1466 Gene3D - 311 482 - -
Cca06g01763 1466 Pfam RNA polymerase Rpb1, domain 1 16 251 IPR007080 GO:0003677|GO:0003899|GO:0006351
Cca06g01763 1466 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1354 - -
Cca06g01763 1466 Pfam RNA polymerase Rpb1, domain 2 316 473 IPR000722 GO:0003677|GO:0003899|GO:0006351
Cca06g01763 1466 Pfam Protein of unknown function (DUF3223) 1362 1433 - -
Cca06g01763 1466 Gene3D RNA polymerase ii 349 401 - -
Cca06g01763 1466 CDD RNAP_IV_RPD1_N 24 852 IPR040403 -
Cca06g01763 1466 Gene3D - 625 805 IPR038120 -
Cca06g01763 1466 SMART rpolaneu7 215 503 IPR006592 GO:0003677|GO:0003899|GO:0006351
Cca06g01763 1466 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1354 IPR045867 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01763 Cca-Chr6 32906764 32924583 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01763 K16250 - gmx:100810483 2491.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01763 06 32906764 32924583 Cca06g01763 06 32906764 32924583 ECH