Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01752 ATGGACCAATCGTTTACTCCTCCTGCTGCAATGTCGTCTTCTCAGCACGAACACGTCAAACGAATGATCAACTCCGATCGCTACAAATCGCCCTCCAAGACAATCTACTCCGACAGGTTCATACCATGCAGATCCGCTTCCAATTTCCCCCTCTTCGATTTGCCGGCGTCCGAGGACACCTGCGGTTGCAGCCCCTACGGCAACGCTCTCCGGACCGCGTTATTCGGACCCAACACCCCCGATAAAACGCGCCCTAATATATTCCGTTACAAAACGGAGACTAAACACTCCATGCACTCGCTCTCGCTAACGCCCTTCGAATTTCACGATGACGCTCTCCCTGGCTACGCCCCTAATTATCCACCGCTCAAGCGCGCTCGCAAGATTCCTCACTCCTCTTTTAAGGTTCTGGATGCGCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAACAATGTCTTGGCTGTGGCTCTGGGCAACTCTGTTTATTTGTGGAACGCTTCCAGCAGCAAGGTAACTAAATTATGCGAATTGGGGGTTGATGATTCCGTTTGTTCCGTTGGCTGGGCTCAACTTGGTGCCTACCTGGCAGTTGGATCGAACAGTGGTAAAGTTCAGATTTGGGATGCATCTCAAGGCAAGACAATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTCTGTCTTCTGGTGGTCGGGATAAAAACATTTATCAACGAGATATACGTGCTCAGGAGGATTTTGTCAGTAAATTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCGTATGATAACCGTGAGTTAGCATCTGGAGGAAATGACAACAAGTTGCTTGTTTGGAATCAAAACTCAACCCAGCCCATCCTAAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATGTTCATGGACTTCTTGCATCTGGAGGAGGGACTGCAGACCGGAGTATTCGTTTCTGGAATACAACAACAAACTCACAGTTAAACTGTATTGACACCGGAAGTCAGGTTTGTAATCTTGTCTGGTCCAAAAATGTCAACGAATTGGTAAGCACACATGGCTACTCCCAGAACCAGATAATAGTTTGGAAATACCCCACCATGTCAAAGCTAGTATCTCTTACAGGACATACTTACAGAGTTCTTTATCTTGCTATCTCTCCTGATGGACAGACTATTGTTACTGGAGCTGGAGATGAAACTCTTAGGTTTTGGAATGTTTTCCCTTCACGGAAATCACAGGATTTTTGTATTCTGCATTCTTGA 1329 0.471 MDQSFTPPAAMSSSQHEHVKRMINSDRYKSPSKTIYSDRFIPCRSASNFPLFDLPASEDTCGCSPYGNALRTALFGPNTPDKTRPNIFRYKTETKHSMHSLSLTPFEFHDDALPGYAPNYPPLKRARKIPHSSFKVLDAPALQDDFYLNLVDWSSNNVLAVALGNSVYLWNASSSKVTKLCELGVDDSVCSVGWAQLGAYLAVGSNSGKVQIWDASQGKTIRTMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPILKFCEHTAAVKAIAWSPHVHGLLASGGGTADRSIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLVSLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSRKSQDFCILHS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01752 442 MobiDBLite consensus disorder prediction 1 25 - -
Cca06g01752 442 ProSitePatterns Trp-Asp (WD) repeats signature. 414 428 IPR019775 -
Cca06g01752 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Cca06g01752 442 Pfam WD domain, G-beta repeat 262 297 IPR001680 GO:0005515
Cca06g01752 442 Pfam WD domain, G-beta repeat 303 342 IPR001680 GO:0005515
Cca06g01752 442 Pfam WD domain, G-beta repeat 391 427 IPR001680 GO:0005515
Cca06g01752 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Cca06g01752 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Cca06g01752 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Cca06g01752 442 Pfam Anaphase-promoting complex subunit 4 WD40 domain 165 238 IPR024977 -
Cca06g01752 442 PANTHER PROTEIN FIZZY-RELATED 1 13 436 - -
Cca06g01752 442 SUPERFAMILY WD40 repeat-like 143 428 IPR036322 GO:0005515
Cca06g01752 442 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 13 436 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cca06g01752 442 Gene3D - 123 431 IPR015943 GO:0005515
Cca06g01752 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 428 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 388 427 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 130 171 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 345 385 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 217 254 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 300 342 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 258 297 IPR001680 GO:0005515
Cca06g01752 442 SMART WD40_4 174 214 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01752 Cca-Chr6 32805612 32810951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01752 259 437 Miscellaneous Gene Families AT5G08390 22.778 6.55e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01752 K03364 - gmx:100785726 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01752 06 32805612 32810951 Cca06g01752 06 32805612 32810951 ECH
Cca11g01688 11 41153766 41161256 Cca06g01752 06 32805612 32810951 PCT