Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01748 ATGTCTTCTGATAGTGCAAAGGAAAATGCATCAGTAGTTGATTCATCAGTCTCTGAATGGAGGCATGACATTGGAAATTCAGATGATCCAGAGAGCTCTGGATACAAATTCAATGAAAACATTAATCAAACTAGGACACATACAGTGGGCCACTCTCATGGGAAGATTGGGCACCCAACAGGAATTGGAGTGGAAAAATGGCACAATATTAAATATTTTATTATCAAGAGTTTGAATCATCAAAACATCCGTTTGTCAATTGAGAAAGGAATTTGGGCTACTCAAATCATGAATGAACGGGTTCTAGAAGAAGCTTTTCATAATTCAGGCACTGTAATCCTCATATTTAGTGTCAACATGAGTGGTTCCTTCCAAGGGTATGCACAAATGATGTCCTCCATTGGAAGGGGCAGAGACAATGTTTGGAGTGAGGGAACTGGCAAAAGTAATCCATGGGGTCGAAGTTTTAAGGTCAAATGGCTGTGTTTGAATGATTTACCTTTCCACAAGACTCTACATCTCAAGAATCCATTGAATGACTACAAGCCTGTCAAAATTAGCAGAGATTGCCAGGAGTTATCTCCAGACATTGGTCTAGCACTTTGTGAACTCCTTGATGGTAAGAATGATATGGATGGCCTGGTGACCAGTTCATCAAGGGACGAATTTTCTTTGAAGGGGTATTATGCAAATACTCCAAGTTCAACAGGAGATGAAGACTGTAACTTTCCTCCACTGCATTTGTCATGGTCAATGCCCCTGCCTTATTCTTCCGCGTTCTACCAAAATCAGCCTGAAGTAAATAAATCTCATTCAGTACACCAGAGATTCAGTGGGTCAATGTTCACTGAAATATTGCCAACCACTTCTGAGTCATCACAAGTGTCGGGGGTTAAACGTTCTCATTTTAGTGAGCATATTCCAAAACGACAAATGAGTAAGGATGAGGCTTCTCAATTTGATTTATGGGGTCTATCTTCGTGGAGCCCTTTAGCTAGTACCCTAAGCGAGGATGATTTTCTTGATATGGTACTGGGAATTTATCTTTTCTCCTCTAAGCAGTTATTTTGTTTTGTTGTCCTTTTTTTTATTTATAAATGTTGTTTAGCTGCCCTTAAGAATCTTCCTTAG 1131 0.3961 MSSDSAKENASVVDSSVSEWRHDIGNSDDPESSGYKFNENINQTRTHTVGHSHGKIGHPTGIGVEKWHNIKYFIIKSLNHQNIRLSIEKGIWATQIMNERVLEEAFHNSGTVILIFSVNMSGSFQGYAQMMSSIGRGRDNVWSEGTGKSNPWGRSFKVKWLCLNDLPFHKTLHLKNPLNDYKPVKISRDCQELSPDIGLALCELLDGKNDMDGLVTSSSRDEFSLKGYYANTPSSTGDEDCNFPPLHLSWSMPLPYSSAFYQNQPEVNKSHSVHQRFSGSMFTEILPTTSESSQVSGVKRSHFSEHIPKRQMSKDEASQFDLWGLSSWSPLASTLSEDDFLDMVLGIYLFSSKQLFCFVVLFFIYKCCLAALKNLP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01748 376 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 8 325 IPR045168 -
Cca06g01748 376 PANTHER YTH DOMAIN-CONTAINING PROTEIN 1 8 325 - -
Cca06g01748 376 Pfam YT521-B-like domain 71 205 IPR007275 GO:0003723
Cca06g01748 376 Gene3D ph1033 like domains 63 215 - -
Cca06g01748 376 MobiDBLite consensus disorder prediction 1 37 - -
Cca06g01748 376 MobiDBLite consensus disorder prediction 1 16 - -
Cca06g01748 376 ProSiteProfiles YTH domain profile. 70 205 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01748 Cca-Chr6 32766895 32771188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01748 K20100 - gmx:100784130 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01748 06 32766895 32771188 Cca06g01748 06 32766895 32771188 ECH