Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01743 ATGAGAGTGATAGTACCTCTGCAAGGAGTTGTTCAAGGCACAGGGGGTCTTTTCTGGGGTTCTGTCATTCCTTGTGCACTCTTCTACTTTCTTCAACTCTTGTTCAAAACCAAGACACGTCATCACCACCCTCCCTCTAACCACAACCACCACTCCACCCTCCACCGCTCTCTCTCTCCCACTCCCCGCCACGCCACCGCCTCTGCTTACGTGTCACCTCGCGCCAATTCCATCACCGCTGCTAACTCTCCTTACTATTTAGGCTTGCACAGGGTCGCTGATGATCCCTACCACCAGACTCATAATCCCCAAGGTGTTATTCAACTTGCTTTCGACCAAAACACCCTATCTCTCGACTTGATTCAAGAATGGATTCACAGCAACGGAACCGCTGCTATGCTGGGGAAACCACTTAGCGTCTCTGGGATTGTTCCTTACCAACCTCTCCATGGATTCATGGAGCTCAAACTGGCTGTGGCTCGTTTCATGTCTCGTGTTTTGGAAAAACCGGTTTTCTTCAACCCCTCGCGAATGGTACTAACCGCAGGTGCTACCTCTGCCATTGAGATTCTAACCTTCTGCCTAGCAGATCATGGAAATGCATTCCTTGTTCCCACGCCTCTTAGCCCTGGCTTTGATGGAGTTGTAAAGTGGCGGACGGGCGTGGAGATAGTACCTGTTCCTTGCCGCAGCACTGATGACTTCAATTTAAGCATAACTTCGCTTGAGCGAACCTTCAACCAAGCAAAGAAGCGTGGTCAAAAAGTTCGTGGAATTATAATGACCAATCCCTCGAATCCTGCTGGCAAATTGTTGAATAGGGAAACACTGCTGGATCTTTTGGACTTTGCTAGAGAGAAGAATATTCACATAATCTCTAATGAAATGTTTGCAGGCTCTTCTTATGGAGACGAAGAGTTTGTGAGCATGGCAGAAATCATGGAGGCAGAAGATCATGACCGGGACAGAGTTCATATAGTGTTTGGTTTGTCAAATGAGCTCTCGGTTCCAGGTTTGAAGGCGGGTGCTATCTACTCCTATAATGACAATGTTGTGGCTGCTGCTAGCAAATTGGCCAGGTTCTCCACTGTTTCTGCTCCAACCCAAAGATTGCTTATCTCCATGCTTTCAGACACAAGTTTTGTGCAAAAGTTTATTGAGGTTAACAAACTGAGGCTGCGGAAAATGTATGATACATTTGTGGCAGGGTTGAAGCAGTTGGGTATTGAATGCACCAGGAGCAGTGGTGGTTTTTGCTGCTGGGCTGACATGAGCAGCTTGATCCGCTCTTACAATGAGAAAGGGGAGCTTGAGCTCTGGGATAGATTGTTGAATGTTTCTAAGATCAATGTTACCCCGGGATCCTCATGTCACTGTATTGAACCTGGGTGGTTTCGTTTTTGTTTTGCCACATGGACCGAAAAGGATGTTTGTGTAGTAATGGAACGGATTCAGAGAATTTATGATGCCACAAAGTGA 1479 0.4699 MRVIVPLQGVVQGTGGLFWGSVIPCALFYFLQLLFKTKTRHHHPPSNHNHHSTLHRSLSPTPRHATASAYVSPRANSITAANSPYYLGLHRVADDPYHQTHNPQGVIQLAFDQNTLSLDLIQEWIHSNGTAAMLGKPLSVSGIVPYQPLHGFMELKLAVARFMSRVLEKPVFFNPSRMVLTAGATSAIEILTFCLADHGNAFLVPTPLSPGFDGVVKWRTGVEIVPVPCRSTDDFNLSITSLERTFNQAKKRGQKVRGIIMTNPSNPAGKLLNRETLLDLLDFAREKNIHIISNEMFAGSSYGDEEFVSMAEIMEAEDHDRDRVHIVFGLSNELSVPGLKAGAIYSYNDNVVAAASKLARFSTVSAPTQRLLISMLSDTSFVQKFIEVNKLRLRKMYDTFVAGLKQLGIECTRSSGGFCCWADMSSLIRSYNEKGELELWDRLLNVSKINVTPGSSCHCIEPGWFRFCFATWTEKDVCVVMERIQRIYDATK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 109 135 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 140 156 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 177 197 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 199 220 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 277 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 289 312 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 323 347 - -
Cca06g01743 492 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 355 378 - -
Cca06g01743 492 SUPERFAMILY PLP-dependent transferases 83 488 IPR015424 -
Cca06g01743 492 Gene3D Aspartate Aminotransferase, domain 1 95 483 IPR015422 GO:0003824
Cca06g01743 492 MobiDBLite consensus disorder prediction 41 70 - -
Cca06g01743 492 CDD AAT_like 146 486 - -
Cca06g01743 492 PANTHER AMINOTRANSFERASE ACS12-RELATED 2 489 - -
Cca06g01743 492 MobiDBLite consensus disorder prediction 51 70 - -
Cca06g01743 492 Pfam Aminotransferase class I and II 112 484 IPR004839 GO:0009058|GO:0030170
Cca06g01743 492 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 489 - -
Cca06g01743 492 Gene3D - 129 378 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01743 Cca-Chr6 32718007 32731069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01743 K14270 - gmx:100783490 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01743 06 32718007 32731069 Cca06g01743 06 32718007 32731069 ECH