Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01735 ATGTCAGCAACGTGCAAACTAGGAGACAACCTTAGCTTAAACGATAAAACCAACGAAAGCCCCTCACCTCCTCCGCCAGTGGTGAAGATGGTGGTCTCAGAACTAAGAGTTCAACGAGGAATAGCCCTTCCAATGGTGGCCATGAACTTGGCTTGGTTTGCCAAGACAGCCATCACAACTGCATTTCTAGGCCGTCTTGGGGAGCTCAGTTTGGCAGGTGGAGCTCTCGGCTTCACTTTTGCTAACGTCACTGGCTTCTCTCTCCTCAATGGCCTTTGCGGTGCCATGGAACCCATATGTGGACAGGCTCATGGTGCCAAAAACTTCAGGCTCCTTCACAAGACCCTTCTCATGACAACCCTCTTGTTGCTGTTGGTATCACTTCCCATCACTTTCTTGTGGCTTCATGTTGACAGCATTTTGATTCGTTTTGGCCAACAGCAAGACATCTCCACAGTGGCCAGAACCTATGTTTCTTGTCTCATACCTGACTTGTATGTCGCCTCATTCTTCTGTCCCTTGAAAGCCTACTTGAGCTCTCAAAGCATAACTCTTCCCACCATGTTTAGTTCTGCTGTGGCACTAGCTTTTCACGTACCCGTTAACATAGTGCTCTCAAAGACCATGGGCCTCAGGGGAGTCTCCATGGCGGTTTGGATAACTGATCTTATTGTTGTGGTTCTGCTTGCCATTTATGTTCTGATTCTTGAGAACAAAAAGGAAAGCATGTGGAAGGAAGGAGGGTGGTGGGATCAGAGCATTGAAGAGTGGATTAGGCTGCTCAAGCTATGTGGATCATGCTGCCTCAACACGTGCCTTGAGTGGTGGTGCTACGAGATCCTAGTTTTACTTACTGGCCACCTCACTAACGCCAAGCAAGCAGTGGGAGTTTTGGCCATTGTGCTAAATTTTGACTATTTGCTTTTCTCAGTCATGTTATCGCTAGCCACTTGTGTTTCCACCCGTGTCTCAAATGAGCTTGGTGCGAACCAACCTCGTCTTGCTTACCGATCAGCGTGCGTGTCTCTGGCATTGGGCTTTATCTCTGGTTGCATAGGCAGCTTGGTGATGGTGGCTGCCAGGGGAATTTGGGGGCCCCTGTTTAGCCATGATGTAGGAATTATAAGGGGAGTAAAGAAAACAATGTTGCTGATGGCTCTAGTAGAAGTGTTTAATTTTCCGTTAGCAGTTTGTGGAGGCATAGTTCGAGGGACAGCAAGACCCTGGTTGGGCATGTATGCGAATCTAGGTGGATTTTACTTCCTGGCCTTGCCACTTGGTGTTGTTTTTGCCTTCAAGCTCCGTCTTGGGCTTGTTGGACTCTTCATTGGACTTGTCACTGGAATTGTCACATGCTTGACGCTGTTATTGGTATTTATTGCGCGGTTAAACTGGATGGAAGAAGCTGCCAAGGCACAAACACTAGCGGGCAACGAGCAGGTTAAGGAACTTCCCAAATATGACACTGAAGAAGGAGTTGACGCTCATGAAAAAGATCAAGTGTAA 1506 0.4781 MSATCKLGDNLSLNDKTNESPSPPPPVVKMVVSELRVQRGIALPMVAMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSLLNGLCGAMEPICGQAHGAKNFRLLHKTLLMTTLLLLLVSLPITFLWLHVDSILIRFGQQQDISTVARTYVSCLIPDLYVASFFCPLKAYLSSQSITLPTMFSSAVALAFHVPVNIVLSKTMGLRGVSMAVWITDLIVVVLLAIYVLILENKKESMWKEGGWWDQSIEEWIRLLKLCGSCCLNTCLEWWCYEILVLLTGHLTNAKQAVGVLAIVLNFDYLLFSVMLSLATCVSTRVSNELGANQPRLAYRSACVSLALGFISGCIGSLVMVAARGIWGPLFSHDVGIIRGVKKTMLLMALVEVFNFPLAVCGGIVRGTARPWLGMYANLGGFYFLALPLGVVFAFKLRLGLVGLFIGLVTGIVTCLTLLLVFIARLNWMEEAAKAQTLAGNEQVKELPKYDTEEGVDAHEKDQV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01735 501 MobiDBLite consensus disorder prediction 1 25 - -
Cca06g01735 501 Pfam MatE 267 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca06g01735 501 Pfam MatE 44 203 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca06g01735 501 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 481 - -
Cca06g01735 501 CDD MATE_eukaryotic 34 471 IPR045069 GO:0042910|GO:1990961
Cca06g01735 501 PANTHER PROTEIN DETOXIFICATION 56 23 481 - -
Cca06g01735 501 MobiDBLite consensus disorder prediction 1 18 - -
Cca06g01735 501 TIGRFAM matE: MATE efflux family protein 44 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01735 Cca-Chr6 32649041 32650546 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01735 K03327 - gmx:100804083 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01735 06 32649041 32650546 Cca06g01735 06 32649041 32650546 ECH