Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01734 ATGGCTGCTGCGAACTACCACTGCCCCGCGAGTCTGATATTGCGGTCCGACATTGGGGTTCGTTTTGTTCACACTTTGACGCTAAAGAGCACCGAGAATTCATGGCTTGGAACTAAAGTTAGGGTTTCACCATGCAATCTCAATCTGAGACCTCTCGTGTCCGTTTGCCGGCGCCGCCCACCCGCCGCCACCGTCTCCTTCAGCCTCCCCACCGCAAATCCAGAGCGTGCTTCTCCTGGCCAAGAAATCCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTACAATGGCTGAATTGGAGGCGAGGAAACTTAAGTATCCCACTACGGGAACTGAAGCGCTTCTCATGGGGGTTCTCATCGAGGGTACTAACCTAGCTGCTAAGTTTTTGCGATCCCATGGAATTACACTTCTCAAGGTGCGAGATGAAACTGTGAAGTTACTAGGAAAAGCTGATTTGTTTTTCTTCAGCCCAGAGCATCCTCCACTAACTGATGAAGCTCAGAGGGCCCTTGATTGGGCTGTTGATCAAAAAATAAAATCTGTTGATGGCGGAGAAATTACCACAGCACACATACTTCTTGGCATCTGGTCTGAAGTGGATTCTCCTGGTCACAAGATTCTGTCCACCCTTGGCTTTAATGATGACAAGGCTAAAGAGCTTGAGTCCTCAATTTCTAAACCTGGATGTACGGATGATTGA 702 0.4843 MAAANYHCPASLILRSDIGVRFVHTLTLKSTENSWLGTKVRVSPCNLNLRPLVSVCRRRPPAATVSFSLPTANPERASPGQEIPKWSSKAIKSFTMAELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRSHGITLLKVRDETVKLLGKADLFFFSPEHPPLTDEAQRALDWAVDQKIKSVDGGEITTAHILLGIWSEVDSPGHKILSTLGFNDDKAKELESSISKPGCTDD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01734 233 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT2, CHLOROPLASTIC 23 233 - -
Cca06g01734 233 Pfam Clp amino terminal domain, pathogenicity island component 186 225 IPR004176 -
Cca06g01734 233 Pfam Clp amino terminal domain, pathogenicity island component 97 149 IPR004176 -
Cca06g01734 233 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 23 233 IPR044217 -
Cca06g01734 233 Gene3D - 85 233 IPR036628 -
Cca06g01734 233 ProSiteProfiles Clp repeat (R) domain profile. 83 228 IPR004176 -
Cca06g01734 233 SUPERFAMILY Double Clp-N motif 85 218 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01734 Cca-Chr6 32643296 32650692 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01734 - - gmx:100527844 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01734 06 32643296 32650692 Cca06g01734 06 32643296 32650692 ECH