Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01716 ATGGCAATCAATTCATTGTCACCACTTTCAATTAATTCGCTTCTCGTATCTTCAACCTCAACTTGCAAGATTTCAAAGCCATTTGCTGTTGTGTGCCGAATGAACTCAAACAGAGATCAGCGTGAAGAATCCAGGAAATGGGGAAAAGTGATTTCGGCGACGTTGGCTGCGGCGGTTATTGCCTTCAGCTCTGACATGTCTGCCCTTGCTGATCTCAACAAATTCGAGGCTGAAATGAGGGGTGAATTTGGAATTGGATCTGCTGCACAATATGGTTCTGCAGACCTTAGGAAAGCGGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACAGCTGCTGATATGAGAGAATCTGATTTTAGCGGTTCAACTTTCAATGGTGCATACCTTGAGAAAGCTGTTGCATACAAGGCAAACTTTTCAGGTGCTGATTTAAGTGATACATTGATGGATCGCATGGTTCTGAATGAAGCCAATCTCACTAATGCCATTCTCCTTAGAACAGTCCTCACACGGAGCGATCTTGGGGGTGCCATCATCGAAGGTGCTGACTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAGCAGGCTTTATGCAAGTATGCTAGTGGCACGAATCCAGTGACAGGAGTAAGCACAAGAGTAAGCTTAGGATGTGGGAACAAACGACGAAATGCTTATGGCTCCCCATCGTCTCCCCTTTTAAGTGCTCCACCTCAGAAACTGCTTGACCGAGACGGTTTCTGTGATGAAGCAACAGGACTTTGTGATGCAAAGTAG 783 0.4521 MAINSLSPLSINSLLVSSTSTCKISKPFAVVCRMNSNRDQREESRKWGKVISATLAAAVIAFSSDMSALADLNKFEAEMRGEFGIGSAAQYGSADLRKAVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAILLRTVLTRSDLGGAIIEGADFSDAVLDLPQKQALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGSPSSPLLSAPPQKLLDRDGFCDEATGLCDAK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01716 260 SUPERFAMILY Pentapeptide repeat-like 93 190 - -
Cca06g01716 260 Gene3D - 89 221 - -
Cca06g01716 260 Pfam Pentapeptide repeats (8 copies) 156 190 IPR001646 -
Cca06g01716 260 Pfam Pentapeptide repeats (8 copies) 114 150 IPR001646 -
Cca06g01716 260 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 2 260 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01716 - - gmx:100805220 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01716 06 32481021 32484441 Cca06g01716 06 32481021 32484441 ECH