Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01703 ATGACAAGTCCGAAGGCGGAGTCCGAAGACAGGGAAGTGATTATAGGGAGAGGTGAAGGAGAAAACGAGTCATGTTCTGGTTTTCAGGGATTGAAGTTTGATTTTGGTAGTGGTAGCAAGAGTAGGACCAAAAGTTTTCATCCTCCAATTGAAACGCATTGGTGTCTCAATTCGTCACCAGGAAAAAAGGCTTCGTCTTCTATTAAGTCAGTGTTGTCTTACCCACTCGCGAAATTTAGAAAGAGTAAAAGTCTTAAAATGATTCTAGAAGGAGCCCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCGAAATGCTGATACAAGAAGACCTCTTGCCACCAAAGCACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACGTGTCAAAATCCAAAGAGATGTTTCAAAATTATCTGAAATGGCGCAAGGAATTTCGAGTAGACGTGCTTCCAAAGGAATTCAATTTCACGGAGTACAATGAAGTGAAGAAATGCTATCCTCATGGATATCACGGAGTTGATAGATACGGTAGACCCGTGTATATTGAGAGAACTGGGATGGTAGACCTTAACAAACTGGGAGAAGTAACCACATTTGAAAGGTTTATCAAATATCATGTGTCAGAGCAAGAGAAAACTCTGAAAGTAAGATACCCTGCATGTTCACTAGCTGCTAAAAAGCACATAGCATCCACTACAAGTATCTTGGATGTCAATGGAGTAGGGATGTCTAATTTCTCAAAGCCCGCAAGATACCTCTTTACGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAATAAAAGCATTCCTAGATGCACGCACAGTATCAAAGATTCAAGTGTTGGGTTCTAATTATCTCAGCGTGCTGCTTGAGGCTGTTGATCCAAGTAATTTGCCAACTTTTATGGGTGGTAATTGCAAATGTTCCGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTATTAACTTGAAAGAAGAGATCGATGGTAAATGCGAAGATCGTGATGTGGCTTCAGAAGATTCCTCCATGACAAAAAATGTTGACATGCAAAGCAAAAATGACAACAACACTATGAGTCTACCTGAGGAGGCAGCATGTGTGGGATCAGACTCGCCATGTGGGTTAGCATTGCAAAAAATTGATTGGCTTGAAGCTGTTATTGGAGACATAAAGAATAAAATCAAGACGCTGGAAGATGCACTACAGGACACCAAGATAGCATTGAAAGAAGTTGCACCGCATATAGAACGGACAAAAATGTAG 1389 0.4075 MTSPKAESEDREVIIGRGEGENESCSGFQGLKFDFGSGSKSRTKSFHPPIETHWCLNSSPGKKASSSIKSVLSYPLAKFRKSKSLKMILEGARDPKDKQIVESFREMLIQEDLLPPKHDDYHTLLRFLRMRDFDVSKSKEMFQNYLKWRKEFRVDVLPKEFNFTEYNEVKKCYPHGYHGVDRYGRPVYIERTGMVDLNKLGEVTTFERFIKYHVSEQEKTLKVRYPACSLAAKKHIASTTSILDVNGVGMSNFSKPARYLFTEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAIKAFLDARTVSKIQVLGSNYLSVLLEAVDPSNLPTFMGGNCKCSDYGGCLMSDRGPWKNPEVLEMIQVINLKEEIDGKCEDRDVASEDSSMTKNVDMQSKNDNNTMSLPEEAACVGSDSPCGLALQKIDWLEAVIGDIKNKIKTLEDALQDTKIALKEVAPHIERTKM 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01703 462 Gene3D - 76 152 - -
Cca06g01703 462 CDD SEC14 163 334 IPR001251 -
Cca06g01703 462 PRINTS Cellular retinaldehyde-binding protein signature 325 334 - -
Cca06g01703 462 PRINTS Cellular retinaldehyde-binding protein signature 123 145 - -
Cca06g01703 462 PRINTS Cellular retinaldehyde-binding protein signature 292 311 - -
Cca06g01703 462 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g01703 462 SUPERFAMILY CRAL/TRIO N-terminal domain 93 158 IPR036273 -
Cca06g01703 462 MobiDBLite consensus disorder prediction 1 18 - -
Cca06g01703 462 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 165 339 IPR001251 -
Cca06g01703 462 Gene3D - 154 388 IPR036865 -
Cca06g01703 462 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 38 460 - -
Cca06g01703 462 Coils Coil 429 449 - -
Cca06g01703 462 SMART CRAL_TRIO_N_2 120 145 IPR011074 -
Cca06g01703 462 SUPERFAMILY CRAL/TRIO domain 165 361 IPR036865 -
Cca06g01703 462 Pfam CRAL/TRIO domain 173 333 IPR001251 -
Cca06g01703 462 SMART sec14_4 165 336 IPR001251 -
Cca06g01703 462 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 38 460 - -
Cca06g01703 462 Pfam CRAL/TRIO, N-terminal domain 111 144 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01703 Cca-Chr6 32314087 32317579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01703 98 330 Acyl Lipid Metabolism Gene Families AT5G47730 28.926 1.68e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01703 - - gmx:100807344 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01703 06 32314087 32317579 Cca06g01703 06 32314087 32317579 ECH