Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01642 ATGGATTTCACGGAGAAGGACCTATTCGGCGAAGATTCCGACAACGAAAACGGGTCCCACTCCACCGGTtcctcttcttcctcctccgccgcttcctcctcctcatcgtcgtcgtcttccgcctcttcctccaacgccagtgacgccgccgccgactcctcctccgccAGCGGAAGCGCCAGCAGCGGCGCCGAAGACGACGAGGAGAATGGCGACGTCGTAGACAGCACCAAGGCGCGTGCCCATCACCAACACGACGACGAAGACAAAGATCTGTTTGGCTCCGATAACGAAGATTACTGTAAAACCCTCGCTCGAAGTCCTTACCCCATTCCTGTATTGCCTGCCACCCGCAATGCAAATAATCAGGGTAGAGGGGGGTTTGGCCGTGGTCGTTGGCAGCAAGGGCATGGAAATGATAGAGGAGCTGGCCTTCTTCCTCGTCCTGGACCTTATCCTCAGAGACAGAATTTTGGGTACGGAAATAGGTTTCAGAATGGCCGCCACGATGAGCGATTTGTCTCTGATTTGAAGCTTTCAAAAAGTGAAGAAACACTGTCAAGGAAGTGCATTGCTTTTCAGGAGCCTTGTGAAATTGCCTGCTATAGTCGTGTAGAAGGCGGGGAAGTATACTTTGACGATCGTAGCTTGAGACTTTTTAAGCGTCATATCACCGAGGATATTGGAGCTGATTTGAATGAAGGTTATGATACATTCATTCCCAAGAAAGACTTAGGCTCAGAAGGCTTTGGCGATCTTCTTGCTTGCATTAGAGACAAAAATATTCCTCTTCAAAATATTCATTTTGTGACATTCCGTAACAATCTTAACAAGATACTGGCAACAGCTTATATCCGTCATGAGCCTTGGGAAATGGGAGTGCACAAAAGGAATGGGGTTGTCTATCTTGATGTGCATAAGTTACCAGAAAGACCACAAAGTGATTTAGATCGCAGGAGATGTTATGTAGGATATTGTTTTGAGAGCCTTGCCACTGAAGATCCTAGAAGAGATGATGGAGAAGGGATACATCATGTTGATGCCAATGTTGAATTTTGTTCTGTGATTAAGACAAAATTAGGAGCTCACCGCATTTTAATGGGTGCTGAGATGGATTGCTGTGATTCAACTAATGAGGGAAAGAGATTTTATGTGGAATTAAAGACAAGTTGTGAGTTAAATTATCACACTGAGGAAAGATTTGAGAGAGAGAAACTGTTAAAGTTTTGGATTCAGTCTTTCCTGGCTGGTGTTCCGTACATTGTCATAGGATTTAGGGATGACGCAGGTCGTCTTGTTCGAACAGAAAGGCTTAGAACCAAAGATATAACTCAGAGAGTGAAAATGAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCATTTGCTGATGAGGTATTATGCTGGCTGTATGGAACAGTCAAAGAAGGTGAAGATTACATTTTGCAGTTTGCTCCACCTTTCAACCGTTTAGAGCTTCTGCAAGCCCAGTCATGCCCAGATGTAATAACAAGTCATCTGGAGCTGTTGTGA 1530 0.417 MDFTEKDLFGEDSDNENGSHSTGSSSSSSAASSSSSSSSSASSSNASDAAADSSSASGSASSGAEDDEENGDVVDSTKARAHHQHDDEDKDLFGSDNEDYCKTLARSPYPIPVLPATRNANNQGRGGFGRGRWQQGHGNDRGAGLLPRPGPYPQRQNFGYGNRFQNGRHDERFVSDLKLSKSEETLSRKCIAFQEPCEIACYSRVEGGEVYFDDRSLRLFKRHITEDIGADLNEGYDTFIPKKDLGSEGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSDLDRRRCYVGYCFESLATEDPRRDDGEGIHHVDANVEFCSVIKTKLGAHRILMGAEMDCCDSTNEGKRFYVELKTSCELNYHTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDAGRLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKEGEDYILQFAPPFNRLELLQAQSCPDVITSHLELL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01642 509 Pfam RAI1 like PD-(D/E)XK nuclease 371 433 IPR013961 -
Cca06g01642 509 MobiDBLite consensus disorder prediction 1 95 - -
Cca06g01642 509 PANTHER DOM-3 RELATED 17 509 IPR039039 -
Cca06g01642 509 MobiDBLite consensus disorder prediction 15 64 - -
Cca06g01642 509 MobiDBLite consensus disorder prediction 73 95 - -
Cca06g01642 509 PANTHER BNAC01G10220D PROTEIN 17 509 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01642 K14845 - gmx:100798780 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01642 06 31655895 31661644 Cca06g01642 06 31655895 31661644 ECH