LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g01638	ATGGCTCTAACACTTCGCTCATCGATTTCCATCGTCAATCAGAAAAAATCCAAGCTCCCAAAACCAAAACACGACGTTCCCACCAAAGTTCACTTCGTAAAAACCAAGCCATCATTGCGTCTCCGAACCAAGTGTTCCATGCAACATGCACATCATGTCACAAGGAACCACACCAACGAGAAAATGGAGAAGGTTCATTCTCCATCGGTTGCTCATGGCCACAAGAACGATTCAATGAGAGTGCCAGTGTTTGTGATGCTGCCACTGGACACAGTGACAATGGGAGGGACTTTGAATAAGGCGAGAGCAATGAATGCTAGTTTGATGGCACTGAAGAGTGCGGGAGTGGAAGGAGTAATGGTGGATGCTTGGTGGGGCTTGGTGGAAAAAGAGGGACCCTTCAAGTATAACTGGGAAGCCTATGCTGAGCTTGTGCAGATGGTTCAGAAACATGGCTTGAAGCTTCAGGTTGTCATGTCCTTCCATCAATGTGGAGGAAATGTTGGAGACTCTTGCAGCATTCCTCTGCCTCCATGGGTGCTGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAAATCAGGGAGGAGGAACCCTGAGTACATCTCCTTGGGCTGTGATTCAATGCCTGTTTTGCGGGGAAGGACGCCTCTTCAAGTGTATTCTGATTACATGAGGAGCTTCCGTGACAGATTCAGAGATTATTTGGGCAGTGTTATCATTGAGATTCAAGTGGGGATGGGTCCTTGTGGGGAGTTGAGATATCCGTCTTATCCAGAAAACAATGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTATGATAAGTATATGAGAGCTTCCTTGGAAGCATCAGCTGAGGCCATAGGGAAGAAAGAGTGGGGAAGAAGTGGACCCCATGACTCAGGCCAGTACAACCAATATCCTGAGAATACTGGATTTTTCAAAAGGGAAGGAACGTGGAACACTGAATATGGAAAATTCTTCCTTGACTGGTACTCCACCAAACTTCTCGAACATGGCGAGAAAATCCTTGTATCAGCCAAAGGAATATTCAACTCTTCTGGAGTGACTCTATCTGCCAAAGTAGCTGGAATTCATTGGCACTACAAGGCAAGGTCACATGCAGCTGAACTAACTGCAGGCTACTACAACACACGGTTTCATGATGGTTACTTGCCAATAGCACAAATGCTGGCAAAACATGGAGTTGTGTTGAATTTCACCTGCATGGAAATGAGGGACAGAGATCAACCTGAACACGCCAATTGTTCGCCAGAGGGGTTGGTTCATCAGGTGAAGATGGCAGCCAGGACAGCTGGAGCAGAAGTTGCAGGGGAGAATGCACTTGAAAGATATGATGCAGGTGCGTTTTCTCAAGTTGTGTCAACGAGTAACTCTGGTTCTGGTTTGGCTGCGTTTACTTATCTGAGGATGAATAAGAGGTTGTTTGAGGGAGACAATTGGCGGCACTTTGTGGAGTTTGTGAAATGCATGTCTGAAGGTGGTAAGAGACAAAGGCTTCCAGAGTCTGATTCATGTGGAACTCATCTTTACGTTGGCCACATCGCAGGAATTCAGAGGAAGCAAGTTCAAGAGGCTGCTCTTGTGTGA	1626	0.4656	MALTLRSSISIVNQKKSKLPKPKHDVPTKVHFVKTKPSLRLRTKCSMQHAHHVTRNHTNEKMEKVHSPSVAHGHKNDSMRVPVFVMLPLDTVTMGGTLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKEGPFKYNWEAYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDSMPVLRGRTPLQVYSDYMRSFRDRFRDYLGSVIIEIQVGMGPCGELRYPSYPENNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKEWGRSGPHDSGQYNQYPENTGFFKREGTWNTEYGKFFLDWYSTKLLEHGEKILVSAKGIFNSSGVTLSAKVAGIHWHYKARSHAAELTAGYYNTRFHDGYLPIAQMLAKHGVVLNFTCMEMRDRDQPEHANCSPEGLVHQVKMAARTAGAEVAGENALERYDAGAFSQVVSTSNSGSGLAAFTYLRMNKRLFEGDNWRHFVEFVKCMSEGGKRQRLPESDSCGTHLYVGHIAGIQRKQVQEAALV	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g01638	541	Pfam	Glycosyl hydrolase family 14	84	499	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	SUPERFAMILY	(Trans)glycosidases	80	506	IPR017853	-
	Cca06g01638	541	ProSitePatterns	Beta-amylase active site 1.	162	170	IPR018238	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	115	129	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	136	154	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	158	179	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	250	272	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	325	344	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	361	377	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	378	389	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	396	419	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	433	455	IPR001554	GO:0000272\|GO:0016161
	Cca06g01638	541	Gene3D	Glycosidases	71	536	-	-
	Cca06g01638	541	PANTHER	BETA-AMYLASE	1	541	-	-
	Cca06g01638	541	PANTHER	-	1	541	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g01638	Cca-Chr6	31631156	31634303	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g01638	1	541	Glycoside Hydrolase	AT4G17090	71.455	0.0	813

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g01638	K01177		-	gmx:100786079	984.556

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca06g01638	06	31631156	31634303	Cca06g01638	06	31631156	31634303	ECH