Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01627 ATGGCGGAATCGATTGAACTTCCGAGTCGATTAGCAATCCTTCCTTTCAGGAACAAAGTTCTTTTGCCTGGCGCCATCATCCGAATTCGTTGCACTTCCCCAAGCAGTGTAAAGTTGGTGGAACAAGAACTTTGGCAGCGAGAAGAGAAGGGGTTGATTGGCATCTTACCGGTGCGTGATGCTGCTGAAATTAAGCCTGTGACTCCGGTAATGTCTCAAGGTGAAGGAACTGATTCTATAGACCAAAGCTCAAAAGTGCGAAGTGGTTCATCAGATTCTCATAAGCTTGATGTGAAAAATCAGCATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGAGCATTACACTTATCGAGGGGAGTGGAGAAACCAAGTGGAAGAGTCACATATATAGTGGTTCTTGAAGGTCTGTGCAGATTTAGTGTCCAGGAACTAAGCACAAGAGGAACATACCATACTGCAAGGATCTCGTCCCTTGAGATGACTAAGACTGAGATGGAACAGGTGGAGCAAGACCCAGATTTCATAATGTTATCTCGCCAATTTAAAGCAACTGCCATGGAGCTTATTTCTGTTCTGGAACAGAAACAAAAAACTGGTGGAAGGACAAAAGTTCTTTTGGAAACTGTTCCAGTTCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAGCTATCAATGTTGGATTCAGTTGACCCTAAAGTGAGGCTTTCAAAAGCGACAGAATTGGTAGATAGGCACTTACAGTCAATACGCGTAGCTGAGAAAATTACTCAAAAGGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTTCGACAGCAGATGAGGGCTATAAAAGAGGAACTCGGAATGCCACAGAATATCTGGAAGCATGCTCACAGAGAGTTAAGGAGACTTAAAAAAATGCAGCCTCAGCAACCGGGGTATAATAGTTCACGGGCTTACCTGGAACTTCTTGCTGATTTGCCATGGCAGAAAGCCAGCAAAGAGCTTGAACTGGATTTAAGAGCTGCACAGGAGCGCCTGGACAGTGATCACTATGGTTTAGTGAAGGTCAAGCAACGGATAATTGAATACCTGGCTGTTCGCAAGCTTAAGCCAGATGCACGGGGTCCAGTATTGTGTTTTGTTGGACCACCAGGTGTTGGGAAGACATCATTGGCATCCTCTATTGCTGCTGCTTTGGGCAGAAAATTTGTGCGTATATCCCTTGGTGGAGTCAAGGATGAAGCTGATATTAGGGGCCATAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTTATAGATGGACTAAAGAAAGTAGCTGTTTGCAATCCTGTCATGCTGCTTGATGAAATTGACAAGACTGGTTCTGATGTTCGTGGAGATCCAGCTTCTGCATTGCTGGAGGTTCTTGATCCAGAACAAAACAAAACATTCAATGATCACTATTTGAATGTTCCATTTGATCTATCCAAGGTAATTTTTGTGGCTACAGCAAATAGAGCACAACCTATTCCTCCACCTCTCCTAGACAGGATGGAGGTCATTGAGCTTCCTGGATATACACCCGAGGAAAAGCTCAAAATAGCCATGCGCCATTTAATTCCAAGAGTTTTGGATCAACATGGATTGAGTTCCGAGTTTCTTCAGATTCCAGAGGGGATGGTGCAACTTGTTATTCAGCAATATACTAGGGAAGCTGGTGTACGCAATTTGGAAAGGAATCTTGCTGCCTTGGCTCGTGCTGCTGCTGTAAGAGTAGCAGAGCAAGAAGTAGTTCCACTTAACAAAGGGGTACAGGGACTTTCTGCCCCACTTCTGGAAAACAGACTTGCTGATGGTGCTGAAGTTGAAATGGAAGTGATACCAATGGGTGTCAACAATCGTGACATTTCAAGCACTTTCCGGATCACCTCTCCGTTGGTTGTTGATGAAGCCATGATTGAAAAAGTGCTTGGGCCCCCAAAGTTTGATGGAAGAGAAGCAGCAGATCGTGTTGCTAATCCTGGGGTATCTGTTGGGCTGGTTTGGACTACTTTTGGTGGAGAAGTTCAGTATGTGGAGGCTACAGCAATGGTTGGGAAGGGTGAATTGCATCTTACTGGACAACTGGGTGATGTAATCAAAGAATCAGCTCAGATTGCTCTTACATGGGTAAGGGCAAGAGCAGCTGAACTTAGGCTAGCTGCTGCAGAAGGCAGTAATCTGTTGGAGGGCCGTGATATACATATACATTTTCCTGCAGGTGCTGTACCCAAAGATGGGCCTTCAGCTGGTGTGACTTTGGTAACAGCATTGGTATCACTTTTCAGTCAGAAAAGAGTGAGATCAGATACAGCTATGACCGGGGAGATGACATTAAGGGGTCTTGTACTACCTGTGGGTGGTATTAAGGATAAGATATTAGCTGCACATCGATGTGGTATTAAGAGAGTCATCCTACCTGAAAGGAACATGAAGGACTTGGTTGAAGTACCATCATCAGTCCTGGCCAACTTGGAGATACTGCTTGCAAAACGTATGGAAGACGTGTTAGAGCAAGCTTTTGACGGTGGTTGCCCTTGGAGACAACACTCAAAGTTGTAA 2604 0.4451 MAESIELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDAAEIKPVTPVMSQGEGTDSIDQSSKVRSGSSDSHKLDVKNQHDVVHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYHTARISSLEMTKTEMEQVEQDPDFIMLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGMPQNIWKHAHRELRRLKKMQPQQPGYNSSRAYLELLADLPWQKASKELELDLRAAQERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKKVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLKIAMRHLIPRVLDQHGLSSEFLQIPEGMVQLVIQQYTREAGVRNLERNLAALARAAAVRVAEQEVVPLNKGVQGLSAPLLENRLADGAEVEMEVIPMGVNNRDISSTFRITSPLVVDEAMIEKVLGPPKFDGREAADRVANPGVSVGLVWTTFGGEVQYVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRARAAELRLAAAEGSNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKRVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRCGIKRVILPERNMKDLVEVPSSVLANLEILLAKRMEDVLEQAFDGGCPWRQHSKL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01627 867 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 867 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cca06g01627 867 Pfam ATPase family associated with various cellular activities (AAA) 385 522 IPR003959 GO:0005524|GO:0016887
Cca06g01627 867 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 760 768 IPR008268 GO:0004176|GO:0004252|GO:0006508
Cca06g01627 867 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 867 - -
Cca06g01627 867 Gene3D - 525 663 - -
Cca06g01627 867 Gene3D - 2 162 IPR046336 -
Cca06g01627 867 PIRSF Lon_proteas 1 610 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cca06g01627 867 PIRSF Lon_proteas 634 858 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cca06g01627 867 MobiDBLite consensus disorder prediction 67 95 - -
Cca06g01627 867 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 867 IPR027501 GO:0004252|GO:0006515
Cca06g01627 867 Gene3D - 346 524 IPR027417 -
Cca06g01627 867 ProSiteProfiles Lon proteolytic domain profile. 672 857 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cca06g01627 867 Gene3D - 674 859 IPR014721 -
Cca06g01627 867 CDD AAA 366 527 - -
Cca06g01627 867 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 810 828 - -
Cca06g01627 867 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 787 806 - -
Cca06g01627 867 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 389 408 - -
Cca06g01627 867 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 675 691 - -
Cca06g01627 867 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 757 776 - -
Cca06g01627 867 Gene3D - 166 296 - -
Cca06g01627 867 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Cca06g01627 867 TIGRFAM lon: endopeptidase La 295 855 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cca06g01627 867 SUPERFAMILY Ribosomal protein S5 domain 2-like 675 854 IPR020568 -
Cca06g01627 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 597 IPR027417 -
Cca06g01627 867 SUPERFAMILY PUA domain-like 10 253 IPR015947 -
Cca06g01627 867 MobiDBLite consensus disorder prediction 72 87 - -
Cca06g01627 867 SMART lon_5 10 254 IPR003111 -
Cca06g01627 867 Pfam Lon protease (S16) C-terminal proteolytic domain 649 855 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cca06g01627 867 SMART AAA_5 381 526 IPR003593 -
Cca06g01627 867 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 254 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01627 Cca-Chr6 31413922 31424106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01627 K01338 - gmx:100796650 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01627 06 31413922 31424106 Cca06g01627 06 31413922 31424106 ECH