Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01625 ATGGACTCGCAACAGACCAATCTATTCGACACCGCTTCGCAACCCGACACAGGCAACGACGCCTACACCTTCCTCGAATTCAACACGCAGGGAGAGGATTTCGACTACCCGGAGTACCGCGACCCGATTAGGTCGCCGGTGGCCTGGCCCACGCCGTCCGATTCGCTGGCGGACCCGCCGGAGCGCGGCGGGGGGCCCGGCTCCGATCACCAGTCCGACGCCTCGCCCGTCTCGGCGGCGCCCGGCAGCGCCACCAAGGGGGGGCGGTCCGGGAGCAGCGGCGCGAACAGCCAGATGGTGGATGCACTCGCGGCTGGGATGAGCGGGTTGAATTTTGAGGACACTGGGGATGATGATAACTACGAGTATGGTAAAGGGGATTTCACCGAACACGCGTGCCGCTATTGCGGGGTTTCGAATCCCGCGTGCGTTGTGAGGTGCAATGTGCCTTCGTGTCGTAAGTGGTTCTGTAATTCTCGGGGGAACACTTCGGGATCGCATATCGTGAATCACCTGGTTCGAGCTAAGCACAAAGAAGTCTGCCTACACAAAGATAGTCCGCTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGTAATGTGTTTCTCCTAGGATTTATTTCTGCAAAGACAGAAAGTGTTGTTGTCCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAGTGGTGCCCCTTGATTGATGATAGGTGTTTCCTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCTCGTCAAATAAGTGCACAGCAAATAAACAAGGTGGAAGAGTTGTGGAAGACAAATCCAGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAGTATGAAGATGCATACCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACTATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTCCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTACGTGCCAGTCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTCGATAGGATGCAAGGGGCTATGAAAACATTTGCTGTGGATGAGACAAGTGTCAGTGGGTATATTTATCATCACTTGTTGGGTCATGAAGTGGAGGTTCAGATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCTGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCATATGGCCAAACAAGGTCAAGGACAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGACCAGTTGGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGTGCGAAGTCAAGGGAAGCTGTGAGTTCTCCCGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAGCAAGGTGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACTGAGAGGGAGATTTCTCAGAGTGCTGATGTTATCTGCTGTACCTGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTCATTGATGAGTCTACTCAAGCAACTGAACCTGAGTGCCTCATACCTTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAACTTGGTCCTGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGGTTAGCGCAGTCACTTTTTGAACGCCTTGTTCTACTCGGTGTGAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGTCTTTCAGAATTTCCCTCTAACAGCTTTTATGAAGGCACCCTTCAAAATGGAGTCACTGTTAATGAGAGACAATCTTCAGGAATTGATTTTCCATGGCCAGTGCCGAACCGTCCCATGTTTTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCGGCAAATGTCGAAAAGATTGTTACTACTTTCTTAAAGAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAGGGACAGAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTCCAAGGAAGGGAGAAAGACTACATCATTCTGTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTCAATGTTGCTTTGACAAGAGCAAGATATGGTATTGTTATTTTGGGAAACCCTAAAGTTTTGAGCAAGCAGCCTCTATGGAATAGTTTATTGACTCACTACAAGGAACACGAGTGCTTAGTTGAAGGGCCTTTAAATAACTTAAAGCAAAGTATGGTTCAGTTTCAGAAACCCAAAAAGATTTACAGTGAACGAAGGCTATTTTATGGGGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTTCTGTTGGATCTGGAGCTGGCACAAGTTCAGATCGGAGGAGCAGTCGAGGAAGGGGATCTTATATACCTCCTGGACCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTTCCAAGGGTTCCTTTGTCTCCTTTTCATGGTGGTCCCCAGTCGCAACCATATGCCATTCCATCTCGTGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCCCCAGGAAGTCGAGGTTTTGGTGCTGGGAGAGGCAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAACAAGGCACCCAACAGCCTATTGGAAATATTGGATCTACATTTAATTTCTCTGCTCTAGAGAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATTATCTCAACCTGGGTTTGCCAACAATATGCCAGTTCAAGGGGCTGGCCAGTCATTTCGTGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTCAATGATTTTTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAATTTCCTTAACCAGAATTCTCAAGCCGGATATTCTCGTTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCACAAGGCCTTTTCACCCAGGTGGGATTCAGTGATCCCTTGCAAGATGATGCGACGCAGAGCCATTTCAGTGTGGCGAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTATACTCCCAACCTTTTGCTCACTACAACACGCAGCCAATTAACATGCAGGCTTCCCAACAGCAGCCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGGTTGA 3798 0.4684 MDSQQTNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEYRDPIRSPVAWPTPSDSLADPPERGGGPGSDHQSDASPVSAAPGSATKGGRSGSSGANSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYSERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLSPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFSALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVNDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQSHFSVANANPLQSQMNSLYSQPFAHYNTQPINMQASQQQPQAQNSQNQKIHYNG 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01625 1265 Pfam Type III restriction enzyme, res subunit 487 549 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cca06g01625 1265 MobiDBLite consensus disorder prediction 950 1085 - -
Cca06g01625 1265 CDD DEXXQc_UPF1 481 716 - -
Cca06g01625 1265 MobiDBLite consensus disorder prediction 71 96 - -
Cca06g01625 1265 Gene3D - 445 715 IPR027417 -
Cca06g01625 1265 PANTHER DNA2/NAM7 HELICASE FAMILY 107 1033 IPR045055 -
Cca06g01625 1265 Pfam RNA helicase (UPF2 interacting domain) 131 284 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cca06g01625 1265 MobiDBLite consensus disorder prediction 1246 1265 - -
Cca06g01625 1265 CDD 1B_UPF1-like 337 424 IPR040812 -
Cca06g01625 1265 Pfam RNA helicase UPF1, 1B domain 336 425 IPR040812 -
Cca06g01625 1265 MobiDBLite consensus disorder prediction 1050 1085 - -
Cca06g01625 1265 Pfam AAA domain 581 684 IPR041677 GO:0004386
Cca06g01625 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 622 IPR014001 -
Cca06g01625 1265 Pfam AAA domain 694 889 IPR041679 -
Cca06g01625 1265 Gene3D - 716 927 IPR027417 -
Cca06g01625 1265 MobiDBLite consensus disorder prediction 1 26 - -
Cca06g01625 1265 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 107 1033 - -
Cca06g01625 1265 MobiDBLite consensus disorder prediction 1 96 - -
Cca06g01625 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 940 IPR027417 -
Cca06g01625 1265 MobiDBLite consensus disorder prediction 954 969 - -
Cca06g01625 1265 CDD SF1_C_Upf1 717 906 IPR041679 -
Cca06g01625 1265 CDD ZBD_UPF1-like 132 254 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cca06g01625 1265 Gene3D - 567 619 - -
Cca06g01625 1265 Gene3D - 337 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01625 Cca-Chr6 31374269 31385470 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01625 K14326 - gmx:100795594 2477.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01625 06 31374269 31385470 Cca06g01625 06 31374269 31385470 ECH