Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01623 ATGGCGCCAGTTTCAGCTTTGGCCAAGTACAAGCTTGTGTTCTTGGGTGACCAATCCGTCGGCAAGACCAGCATCATCACTCGTTTCATGTACGATAAATTCGACAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGACCGGACTGTTCGACTGCAATTGTGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATTTGACGTTGCAAGTCGGCAGACTTTCTTAAATACATCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTTGTTGAAAAAAGACAAGTCTCTATAGAGGAAGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAACATAAAGGCCCTTTTTCGAAAAATTGCAGCAGCATTACCCGGAATGGAAACATTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCTACAAGTGGCAGTTCTCAATCTCAACCCCAGTCAAGTGGATGTTCTTGTTAA 624 0.4119 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSTSGSSQSQPQSSGCSC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01623 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 178 IPR027417 -
Cca06g01623 207 ProSiteProfiles small GTPase Ras family profile. 5 207 IPR001806 GO:0003924|GO:0005525
Cca06g01623 207 ProSiteProfiles small GTPase Rho family profile. 3 179 - -
Cca06g01623 207 CDD Rab6 10 170 - -
Cca06g01623 207 SMART rab_sub_5 10 173 - -
Cca06g01623 207 ProSiteProfiles small GTPase Rab1 family profile. 5 207 - -
Cca06g01623 207 PANTHER DRAB5-RELATED 1 207 - -
Cca06g01623 207 SMART ran_sub_2 15 207 - -
Cca06g01623 207 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Cca06g01623 207 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Cca06g01623 207 SMART ras_sub_4 7 173 - -
Cca06g01623 207 Gene3D - 6 203 IPR027417 -
Cca06g01623 207 PRINTS Transforming protein P21 ras signature 10 31 - -
Cca06g01623 207 PRINTS Transforming protein P21 ras signature 33 49 - -
Cca06g01623 207 PRINTS Transforming protein P21 ras signature 51 73 - -
Cca06g01623 207 PRINTS Transforming protein P21 ras signature 113 126 - -
Cca06g01623 207 PRINTS Transforming protein P21 ras signature 148 170 - -
Cca06g01623 207 PANTHER GTP-BINDING PROTEIN RAB6 1 207 - -
Cca06g01623 207 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01623 Cca-Chr6 31361229 31365527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01623 K07893 - egt:105965429 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01623 06 31361229 31365527 Cca06g01623 06 31361229 31365527 ECH