Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01622 ATGTTGGTATTTCAAGCAAAATGCATTAAACGCATGGAAGCTGTTACTCAGAGGTTTATATCTAGATGGTCCACTACATTTTATGCTCGTTATTCTGATACTCCTCATAAGAAGTCTAAGCTTGCACCTTTGCAGGAGAGAAGAATGATAGACCAGTGTAAGGTATTTGCAAAAGCAGGTGATGGAGGTAATGGTTGCTCCAGCTTACGCAAGGGAAGACCTGATGGTGGCAATGGGGGGAGAGGCGGTGATGTGATTCTGGAATGCTCTCCCAGAGTTTGGGACTTCAGTGGTTTGCAGCGTCACTTGATAGCTGAGAAAGGAGGACCTGGATCATCAAAAAAGATGATAGGCACCACGGGTGCTGATAAGGTTGCCCGCGTACCAATTGGCACTGTACTTCATCTTGTTAACGGTGATATTCCTTCTATTGTTAAAATTCAATCCTCAACAGATGTAGACCCTTGGGAGATTCCTGGAGCACTTGTTGAAGATCTTCCCTACCCTGCCAATGGTTCAACCTCAAGTATTACAAGTGGGGAAGTCAAAGCAATACATTCTACTAGCTGTTCCTCATCACAAGCCGAAGAAACAAATGTTGAGAAATCTGAAAAATCAAGACAAGTTGCATCAACAGATGTATTTTCTAAACTCTCCACTTCTAATGGAGCTCCTGAATTTGGTACAGAGGAAATAGGGGAGAAACAAGAGATACTATACAATGTTGCCGAGTTAACAGAAGAAGGTCAACAAATTGTCATTGCTCGGGGAGGAGAGGGTGGTCTGGGCAATGCATATTGTTCCAAAGATTCAAGGAAGCCTGTGAGTATGAAGGCAGGGGCATGTCAACACGTATCTAATCTTCAGGACCCTGACAGTGTTCACTCCTCTCTGCATGAAGGTTCACCAGGTTCTGAGACTGTTCTTATATTAGAACTCAAGAGTATTGCTGATGTGAGCTTTGTGGGAATGCCTAATGCTGGTAAAAGCACTTTACTTGGGGCTATATCAAGGGCAAAGCCTGCTACTGGTGACTATGCCTTCACTACTCTTAGGCCAAATTTGGGAAATCTAAACTTTGATGATCTCTCAATAACCGTGGCTGATATTCCTGGACTTATAAAAGGTGCACACCAAAATCGTGGACTCGGACATGCATTTCTGCGCCACATAGAACGCACAAAGGTTCTTGCTTATGTGGTAGACCTGGCTGCTGCTTTAAATGGAAGAAAGGGAATTCCACCATGGGAACAACTGAAAGACTTAATTCTTGAGCTTGAGTACCATCAAGATGGTTTATCCAATCGACCATCCTTGATAGTTGCTAATAAGATTGATGAGGAGGGTGCAGATGAAGTGTATAAAGAGTTAAAGAGGAGGGTCCAGGGTGTTCCCATCTTTCCTGTGTGTGCTGTTTTGGAGGAAGGGATAGCAGATCTTAAAGCAGGCCTTAAAATGCTTGTCAATGCTGAAACGTCATATAGACTTTCCCTAGATCAGATTTTGCTTGCTTAG 1515 0.4337 MLVFQAKCIKRMEAVTQRFISRWSTTFYARYSDTPHKKSKLAPLQERRMIDQCKVFAKAGDGGNGCSSLRKGRPDGGNGGRGGDVILECSPRVWDFSGLQRHLIAEKGGPGSSKKMIGTTGADKVARVPIGTVLHLVNGDIPSIVKIQSSTDVDPWEIPGALVEDLPYPANGSTSSITSGEVKAIHSTSCSSSQAEETNVEKSEKSRQVASTDVFSKLSTSNGAPEFGTEEIGEKQEILYNVAELTEEGQQIVIARGGEGGLGNAYCSKDSRKPVSMKAGACQHVSNLQDPDSVHSSLHEGSPGSETVLILELKSIADVSFVGMPNAGKSTLLGAISRAKPATGDYAFTTLRPNLGNLNFDDLSITVADIPGLIKGAHQNRGLGHAFLRHIERTKVLAYVVDLAAALNGRKGIPPWEQLKDLILELEYHQDGLSNRPSLIVANKIDEEGADEVYKELKRRVQGVPIFPVCAVLEEGIADLKAGLKMLVNAETSYRLSLDQILLA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01622 504 ProSiteProfiles Obg domain profile. 47 316 IPR006169 -
Cca06g01622 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 487 IPR027417 -
Cca06g01622 504 MobiDBLite consensus disorder prediction 188 213 - -
Cca06g01622 504 Gene3D GTP1/OBG domain 49 315 IPR036726 -
Cca06g01622 504 Pfam GTP1/OBG 50 135 IPR006169 -
Cca06g01622 504 Gene3D - 316 497 IPR027417 -
Cca06g01622 504 Pfam 50S ribosome-binding GTPase 319 444 IPR006073 GO:0005525
Cca06g01622 504 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 317 489 IPR031167 GO:0005525
Cca06g01622 504 PANTHER BNAA08G29050D PROTEIN 17 501 - -
Cca06g01622 504 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 17 501 IPR045086 GO:0003924|GO:0005525
Cca06g01622 504 SUPERFAMILY Obg GTP-binding protein N-terminal domain 49 281 IPR036726 -
Cca06g01622 504 PIRSF GTP-binding_obg 46 500 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cca06g01622 504 PRINTS GTP1/OBG GTP-binding protein family signature 319 339 IPR006073 GO:0005525
Cca06g01622 504 PRINTS GTP1/OBG GTP-binding protein family signature 340 358 IPR006073 GO:0005525
Cca06g01622 504 PRINTS GTP1/OBG GTP-binding protein family signature 367 382 IPR006073 GO:0005525
Cca06g01622 504 PRINTS GTP1/OBG GTP-binding protein family signature 384 402 IPR006073 GO:0005525
Cca06g01622 504 CDD Obg 317 488 IPR031167 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01622 Cca-Chr6 31350653 31353592 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01622 - - gmx:100808337 866.3