Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01619 ATGACGGCTTCTTCTGAAAATTGCATCTCAAGCAGCCAGAGTTCTCTTACCAAACTCGCTCCACTTGAAGCAGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTACTATGCCTTCCGTGAAATGCTTCTAGAGATTGGGTTTAATGGAGGTGTTCCTATAGATGAGGAATTCTTTATTGAGACTGTAGCTGGTAAACACAATGATGATATAGCCTTGGCTCTCTTTCCTGGTGATCTTGAACGAGGTTTAAAGTTTGTAGATGATAAGGAAGCCATGTTCCGGAGATTGGCAGCAGAGCAATTGAAGCCTTTAAATGGCCTTGACAAAGTGAAGAAATGGATTGAAAATCATGGGTTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCACTACTTGGTCTCTCAGATTTCTTTGAGGCTATTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCACCCAGACCCCTACCTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCCGTTATTGGTTTAGCTACTCGAAACCCAGAAAGCTTATTGATGGAAGCAAAGCCTGCCTTTCTGATTAAGGATTATGATGATCCAAAATTGTGGGCTGCTTTGGAAGAACTTGACAAGGCTGGTGCCCCTTCGGTTTGA 747 0.4337 MTASSENCISSSQSSLTKLAPLEAVLFDIDGTLCDSDPLHYYAFREMLLEIGFNGGVPIDEEFFIETVAGKHNDDIALALFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVKKWIENHGLKRAAVTNAPRANAELMISLLGLSDFFEAIIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLATRNPESLLMEAKPAFLIKDYDDPKLWAALEELDKAGAPSV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01619 248 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 243 - -
Cca06g01619 248 Gene3D - 23 230 IPR023214 -
Cca06g01619 248 SUPERFAMILY HAD-like 17 239 IPR036412 -
Cca06g01619 248 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 243 - -
Cca06g01619 248 Pfam Haloacid dehalogenase-like hydrolase 25 206 IPR041492 -
Cca06g01619 248 SFLD Haloacid Dehalogenase 22 230 - -
Cca06g01619 248 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Cca06g01619 248 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 120 133 IPR006439 -
Cca06g01619 248 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 167 IPR006439 -
Cca06g01619 248 Gene3D Putative phosphatase; domain 2 37 105 IPR023198 -
Cca06g01619 248 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 96 206 IPR006439 -
Cca06g01619 248 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 22 230 - -
Cca06g01619 248 CDD HAD_BPGM-like 24 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01619 Cca-Chr6 31330916 31334194 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01619 - - gmx:100793483 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01619 06 31330916 31334194 Cca06g01619 06 31330916 31334194 ECH