Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01618 ATGCTTCGTCACCACCATTCACCAATCTTCCCGCGGATTTTGAACTCCTCATTTGGCAGCGTGCAGCATCAACATGTTCACCGCAGCAACCATCCCCAACCCCAGAAGCCCCAATTTCCGTTTCCTCCAAAACCCGAATGCGACGAGTCTCTGCTCCTCCACTACCTCTCCAACGGGTTGCACCACGAGGCCCAAAACCTCCTCCAAAACTCCTCCGAAGGGGACCTTCACACGCGCGTCGTTCGCTGGACCTCCCTACTCTCCAGCTTCTCCCGCCACGGTCATGTGCCCCAAGCACGCGCACTGTTCGACATAATGCCCCACAGAAACCTCGTCACTTTCAATGCCATGTTGTCCGCGTACCTCGGCTCCGGCATGCTCCACGAGGCTTTCCGCTTCTTCCGGGCCATGCCGGAGAAGAACGTCGTATCCTGGACCGCCATGCTCGGTGGGTTAGCCAACGCGGGCCGGATCGACGATGCGAGGAAGGTGTTTGATGAAATGCCTGAGAGGAATGTCGTTTCGTGGAACACCATGGTGGCGGCGTTGGTTAGGAGTGGGGAATTGGAGGAAGCGAGGGTGGTTTTTGAAGAGATTCCTTTTAAGAATGTGGTTTCTTGGAATGCTATGATTGCAGGGTATGTTGAGAGTGGGAGAATGGATGAGGCAAGAGCCTTGTTTGAGAAAATGGAATTTAGGAATGTGGTTACTTGGACTAGCATGATATCTGGTTATTGCCGTGAGGGGGATGTGGAGGAGGCTTATTGTTTGTTCCGGGCTATGCCCGAGAGAAATGTTGTTTCTTGGACTGCTTTGATTGGTGGGTTTGCTTGGAATGGGTTTTATGGAGAGGCATTGTTGCTTTTTCTTGAGATGGTGAGAGTTTCTGATGCGAAACCCAATGGCGAGACCTTTGTTTCACTTGTTTATGCTTGTGGTGGTTTGGGTTTTTCTTGGCTTGGTAAGCAGGTGCATGCTCAGGTGATTGTTAACAGCTGGGGGGTTGATGATTATGATGGTAGGTTGCGTAGAGGTCTTGTTAGGATGTACTCTGGGTTTGGTCTTATGGACTCTGCGCGCAATGTGCTTGAAGGTAATCTGAAAGACTGTGATGATCAGTGTTTCAATTCCATGATAGATGGTTATGTTAGAGCCGGTCAGCTGGAAAGAGCTCAAGAGTTGTTTGACATGGTACCTGTTAGGAGGAACAAGGTTGCGTCGACTTGCATGATTGCTGGCTATCTTAGTGCTGGGCAAGTATTGAATGCTTGGAATTTGTTTAAGATGTCTGATAGGGATTCCATTGCGTGGACTACGATGATTTACGGGTACGTGCAGAATGAGCTCATTGCTGAAGCGATCTGCTTATTTGCTGAGATGATGGCTCATGGTGCTTCTCCTTTGAATTCTACATATGCTGTTATATTCGGAGCCATGGGTTCAATTGCATATCTTGATCAGGGCCGGCAATTACATGGTATGCAGTTGAAGACAGTGTATGAATATGATTTGATTCTTGAGAACTCTCTAATTGCAATGTATGCAAAATGTGGGGAGATAGACGATGCATATAGGATATTCTCTAAGATGACTTACCGGGACAACATTTCTTGGAACACCATGATCATGTGCCTTTCAGATCATGGGAGAGCCAGTGAAGCTTTAAAAGTGTATGAAAATATGCTTGAATTTGGAATTTACCCGGATAGCCTTACTTTCCTGGGTGTCCTGACAGCATGTGCTCATGCGGGTCTTGTTGATAAAGGGTGGGAGTTATTTATTGCCATGGTTGATACTTATGATATTCAACCTGGCTTGGAGCATTATATTAGTATTATCAATCTTCTGGGTCGAGCAGGAAAGGTGAAAGATGCAGAGGAGTTTGTCTTGAGGCTACCTGTTGAACCAAATCATGCCATTTGGGGGGCACTAATTGGAGTGTGTGGATTGAGTAAAACTGATGCAGATGTTGCTAGGCGTGCAGCCAAACGACTATTTGAGTTGGATCCTTTAAATGCACCCGGCCATGTGACCCTCTGTAACATATATGCCGCAAATGATAGGAACATAGAGGAGACATGTTTAAGAAAAGAAATGAGGATGAAAGGTGTGAGGAAGGCACCTGGATGTAGTTGGATATTGGTGAAGGGGACAGTTCATGTTTTCTCATCTGATGATAAATTACTTCTGACAGTCTAA 2199 0.4688 MLRHHHSPIFPRILNSSFGSVQHQHVHRSNHPQPQKPQFPFPPKPECDESLLLHYLSNGLHHEAQNLLQNSSEGDLHTRVVRWTSLLSSFSRHGHVPQARALFDIMPHRNLVTFNAMLSAYLGSGMLHEAFRFFRAMPEKNVVSWTAMLGGLANAGRIDDARKVFDEMPERNVVSWNTMVAALVRSGELEEARVVFEEIPFKNVVSWNAMIAGYVESGRMDEARALFEKMEFRNVVTWTSMISGYCREGDVEEAYCLFRAMPERNVVSWTALIGGFAWNGFYGEALLLFLEMVRVSDAKPNGETFVSLVYACGGLGFSWLGKQVHAQVIVNSWGVDDYDGRLRRGLVRMYSGFGLMDSARNVLEGNLKDCDDQCFNSMIDGYVRAGQLERAQELFDMVPVRRNKVASTCMIAGYLSAGQVLNAWNLFKMSDRDSIAWTTMIYGYVQNELIAEAICLFAEMMAHGASPLNSTYAVIFGAMGSIAYLDQGRQLHGMQLKTVYEYDLILENSLIAMYAKCGEIDDAYRIFSKMTYRDNISWNTMIMCLSDHGRASEALKVYENMLEFGIYPDSLTFLGVLTACAHAGLVDKGWELFIAMVDTYDIQPGLEHYISIINLLGRAGKVKDAEEFVLRLPVEPNHAIWGALIGVCGLSKTDADVARRAAKRLFELDPLNAPGHVTLCNIYAANDRNIEETCLRKEMRMKGVRKAPGCSWILVKGTVHVFSSDDKLLLTV 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 140 IPR002885 -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 113 - -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 113 202 - -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 200 267 - -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 267 723 - -
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Cca06g01618 732 SUPERFAMILY TPR-like 155 687 IPR011990 GO:0005515
Cca06g01618 732 Pfam E motif 654 713 IPR046848 -
Cca06g01618 732 MobiDBLite consensus disorder prediction 21 43 - -
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 536 570 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 236 267 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 143 174 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 374 397 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 174 202 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 436 467 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 205 235 IPR002885 -
Cca06g01618 732 TIGRFAM PPR: pentatricopeptide repeat domain 112 143 IPR002885 -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 200 267 - -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 113 202 - -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 30 113 - -
Cca06g01618 732 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 267 723 - -
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Cca06g01618 732 Pfam PPR repeat family 534 581 IPR002885 -
Cca06g01618 732 Pfam PPR repeat family 433 479 IPR002885 -
Cca06g01618 732 Pfam PPR repeat family 140 173 IPR002885 -
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 233 261 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 203 231 IPR002885 -
Cca06g01618 732 Gene3D Tetratricopeptide repeat domain 503 726 IPR011990 GO:0005515
Cca06g01618 732 Pfam PPR repeat 508 531 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 174 200 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 267 294 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 408 429 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 609 629 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 374 397 IPR002885 -
Cca06g01618 732 Pfam PPR repeat 83 110 IPR002885 -
Cca06g01618 732 Gene3D Tetratricopeptide repeat domain 431 498 IPR011990 GO:0005515
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Cca06g01618 732 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 533 IPR002885 -
Cca06g01618 732 Gene3D Tetratricopeptide repeat domain 148 232 IPR011990 GO:0005515
Cca06g01618 732 Gene3D Tetratricopeptide repeat domain 233 316 IPR011990 GO:0005515
Cca06g01618 732 Gene3D Tetratricopeptide repeat domain 43 147 IPR011990 GO:0005515
Cca06g01618 732 Gene3D Tetratricopeptide repeat domain 341 430 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01618 Cca-Chr6 31324809 31327007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01618 371 728 Glycoside Hydrolase AT3G49170 24.211 1.12e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01618 - - gmx:102669560 1238.79