Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01603 ATGGCATCCATTCATCTTTCTTCCGCCGCTACGGCTCTCTTCCAATCCGATTTCTCTCTCTCCAAATCCCCCACCAAACGCATTCCACGCCTACCTACAATCGCCCGGATAACCAACCACACCGAGGGAACGCAATTCAACTCCTCCAACGGCTCTCCCACCGTCGTCAACGCAACCTCTCCGGTTGAGGTTCAGTCCGGTAACTATGGCGCGGGACACGCCTGGGATAATTCCGACGCACGTAGGAAAACTAAAATCGTTTGCACTATAGGTCCTTCTACGAGCTCACGTGACATGATATGGAACCTGGCCGAAGCGGGAATGAACGTGGCGCGTTTGAACATGTCGCATGGGGACCACGCGTCGCACCTGCAAACCATTGATTTGGTGAAAGAATACAATGCTCAATTTCAGGATAAGGTCATTTCCATCATGCTCGACACCAAGGGTCCTGAAGTTAGAAGTGGGGATGTACCTCAACCAATTTTACTTAAAGAAGGACAAGAATTCTATTTCACCACTAGGAGAGGGGTCAGCACAGAAGACACGGTTAGCGTGAATTATGATGGTTTTGTGAATGATGTGGAGGTTGGAGATGTGTTGCTGGTCGATGGAGGAATGATGTCTCTTGCTGTTAAGTCAAAGACAAAAGATATTGTTAAATGTGAGGTTGTTGATGGGGGTGAATTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACAGACAAGGACTGGGAAGATATCAAGTTTGGGGTGGACAATCAAGTAGACTTCTATGCTGTCTCATTTGTCAAGGATGCTAGAGTGGTTCATGAGTTAAAAGATTACCTCAAAAGTCATAATGCCGATATACATGTGATTGTAAAAATTGAAAGTGCAGATTCCATACCAAATCTTCATTCGATACTTTCAGCTTCAGATGGGGCCATGGTTGCTCGTGGGGACCTTGGAGCTGAACTTCCAATAGAGGAAGTTCCATTATTGCAGGAGGACATCATTAGAAGATGTCACAGTATGCAAAAGCCAGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTAATCATCCCACACCAACAAGGGCAGAAGTCTCTGACATTGCAATTGCGGTAAGACAAGGTGCTGATGCTATCATGCTCTCAGGAGAAACTGCACATGGAAAATTTCCATTGAAAGCCGTTAAAGTTATGCATGTGGTGGCCCTTAGGAATGAATCCAGTGTTCAAAGTGGTGTTGCTTATCCAAGTCAATTGAGTTCCCATGAAAGCCATATGGGAGGAATGTTTGCTTTCCATGCGACAACAATGTCTAACACTCTTAATACTCCTATTATTGTTTTCACAAGAACAGGATCCATGGCTATTCTTTTGAGCCATTATAGGCCTTACTCAACTATCTTTGCATTCACTAATGAGGCTAGGATTAAGCAGAGGTTGGCGCTTTATCATGGTGTTATGCCCATATACATGCAATTTTCAAATGATGCAGAGGAGACTTTCTCTAGAGCCCTCAAACTACTAATGAGTAAGGGTCATTTACACGAGGGACAGCATGTTACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGAGGAATCCACTCACCATATACAAGTTCGCAAGTTTTTGGTCTATACATTTGAAAGGTGA 1677 0.4413 MASIHLSSAATALFQSDFSLSKSPTKRIPRLPTIARITNHTEGTQFNSSNGSPTVVNATSPVEVQSGNYGAGHAWDNSDARRKTKIVCTIGPSTSSRDMIWNLAEAGMNVARLNMSHGDHASHLQTIDLVKEYNAQFQDKVISIMLDTKGPEVRSGDVPQPILLKEGQEFYFTTRRGVSTEDTVSVNYDGFVNDVEVGDVLLVDGGMMSLAVKSKTKDIVKCEVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDARVVHELKDYLKSHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCHSMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVRQGADAIMLSGETAHGKFPLKAVKVMHVVALRNESSVQSGVAYPSQLSSHESHMGGMFAFHATTMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNEARIKQRLALYHGVMPIYMQFSNDAEETFSRALKLLMSKGHLHEGQHVTLVQSGAQPIWREESTHHIQVRKFLVYTFER 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01603 558 Pfam Pyruvate kinase, alpha/beta domain 443 531 IPR015795 -
Cca06g01603 558 Gene3D - 413 531 IPR036918 -
Cca06g01603 558 PANTHER PLASTIDIAL PYRUVATE KINASE 3, CHLOROPLASTIC 35 551 - -
Cca06g01603 558 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 77 415 IPR015813 GO:0003824
Cca06g01603 558 ProSitePatterns Pyruvate kinase active site signature. 292 304 IPR018209 GO:0004743|GO:0006096
Cca06g01603 558 PRINTS Pyruvate kinase family signature 140 156 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 PRINTS Pyruvate kinase family signature 264 278 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 PRINTS Pyruvate kinase family signature 294 320 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 PRINTS Pyruvate kinase family signature 321 345 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 PRINTS Pyruvate kinase family signature 346 370 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 PRINTS Pyruvate kinase family signature 371 389 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 PRINTS Pyruvate kinase family signature 390 406 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 TIGRFAM pyruv_kin: pyruvate kinase 82 548 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 Pfam Pyruvate kinase, barrel domain 82 418 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 SUPERFAMILY PK C-terminal domain-like 400 549 IPR036918 -
Cca06g01603 558 Gene3D - 82 412 IPR040442 -
Cca06g01603 558 SUPERFAMILY PK beta-barrel domain-like 151 242 IPR011037 -
Cca06g01603 558 PANTHER PYRUVATE KINASE 35 551 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca06g01603 558 Gene3D - 151 246 IPR015806 GO:0004743|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01603 Cca-Chr6 31207861 31220780 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01603 K00873 - gmx:100776984 955.666