Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01598 ATGGCACTCAGGATGTGGGCTTCTTCAACTGCCAATGCACTCAAACTCTCTTCTGCCTCCAGACctcatctcttcccttctttctctttctCAAGATGCTTATCTACCGTCTTGGATGGACTCAAGTACGCAGATTCACATGAATGGGTCAAGCATGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCTCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAACCAGGTGGTGCAGTTAGCAAGAAGAGTGGCTTCGGAGCAGTTGAAAGTGTTAAAGCAACAAGTGATATAAATTCTCCAATCTCGGGGGAGATTGTTGAGGTTAACAAAAAGCTCACAGAAACTCCTGGCCTGGTCAATTCAAGCCCATACGAAGATGGATGGATGATCAAAGTAAAGCCAAGTGATCCATCTGAATTACATTCCTTGATGGGTCCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCTAGTCATTAA 498 0.4317 MALRMWASSTANALKLSSASRPHLFPSFSFSRCLSTVLDGLKYADSHEWVKHEGSVATIGITDHAQDHLGEVVYVELPEPGGAVSKKSGFGAVESVKATSDINSPISGEIVEVNKKLTETPGLVNSSPYEDGWMIKVKPSDPSELHSLMGPKEYTKFCEEEDASH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01598 165 TIGRFAM gcvH: glycine cleavage system H protein 39 162 IPR017453 GO:0005960|GO:0019464
Cca06g01598 165 ProSiteProfiles Biotinyl/lipoyl domain profile. 56 138 IPR000089 -
Cca06g01598 165 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 1 165 IPR002930 GO:0005960|GO:0019464
Cca06g01598 165 Gene3D - 35 165 - -
Cca06g01598 165 SUPERFAMILY Single hybrid motif 37 160 IPR011053 -
Cca06g01598 165 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 1 165 - -
Cca06g01598 165 Pfam Glycine cleavage H-protein 41 160 IPR033753 -
Cca06g01598 165 CDD GCS_H 43 137 IPR033753 -
Cca06g01598 165 Hamap Glycine cleavage system H protein [gcvH]. 38 159 IPR002930 GO:0005960|GO:0019464
Cca06g01598 165 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 81 110 IPR003016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01598 Cca-Chr6 31152060 31154017 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01598 K02437 - gmx:100785811 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01598 06 31152060 31154017 Cca06g01598 06 31152060 31154017 ECH