Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01416 ATGACAGGGTCATCGAGAAAAGGACGTGTGTTCCTAGAAGAAAGTAGTGACGATGGTCGAAAGTTCGGAAAGTTAAAGAAGGACGAGTTCGACGGGTATAACTCCGATAACCACCCAAGAAAAAACAGCCCCGTGACGTTGGACGCATCTCATTTGGATCCTCAAATGGCCGCAGATAACGCTCCCTACGACCCTTCTCTCTCTCCCTTATCCAAATCCCCATGGTCCTCTCACATCAACGAAGACGCTTTCGTCTCCAACGAAAACGAAGCTCTCGTGGGGTCCCTAGTCCGCGAAGAGGGTCACATATACTCCCTCGCCGCAACAAAGGATTTGTTGTACACAGGTTCAGATAGTAAAAACATTCGCGTGTGGAAGAATCAGAAGGAGTTCGCAGGGTTTAAGTCCAACAGCGGGTTAGTGAAAGCTATCGTGATTGCCGGCGAGAAAATCCTCACGGGACACCAAGACGGAAGGATAAGGGTATGGAAAGTTTCGGGGAAAAACGAGCAACAACACAAGCGCGTGGCGACTCTTCCAACCCTAAGAAACTACATCAAATGTTCCATGAAACCGAGCAACTACGTGGAGGTGAGACGACACCGTAACGTGTTGTGGATCAAACACTACGACGCCATCTCGTGTCTCAGCATAACGGAGGATCACTCTCTTATATACTCGGCCTCGTGGGACAAAACGTTCAAGGTGTGGAGAACCGCGAACTTCAAGTGCTTGGAGTCGGTGACGGCGCACGACGACGCCGTTAACGCGTTGGTGGTGGGGCCGGAGGGGTTGGTTTTCACGGGATCCGCTGACGGCACCGTTAAGATTTGGCGGCGGGAGGCGCAGGGGAAGACGACGAAGCATTTCTTCTCGCAAACACTGTTGAAGCAAGAATGCGCGGTGACGGCGTTAGCGATTAACGTTGAGGGGAATCTGTTGTACGCGGGTTCCTCCGATGGCTTAGTGAATTTTTGGGTTAGAGGGGCCAAGTTTGAGCACAAGGGGGTTTTGAGAGGGCACAAGTTGGCGGTGTTGTGTTTGGCGACGGCGGGGGGGTTGGTGTTCAGCGGCTCCGCCGACATGTCCATATGCGTGTGGCGGAGGACGCTGAGCGACGAGCACACGTGCGTGAATGTTCTTTCGGGGCACACTGGCCCCGTGAAGTGTCTGGCGGCGGAGAGGGACCCCGACGCCATGTGCAACGAGCGCAAGTGGATTTTGTATAGCGGGAGCTTGGACAAGTCGGTGAAGGTGTGGAAGGTGTCGGAGAACGCGGCGGCGCCGACCAACGTGCAGCTCCCGCGGCTGAGTGCTGATCAGTTTCCCAGGTCTTCGTCCTTGAGGAAAATGGGGTCTAGGAGATACTAG 1371 0.5412 MTGSSRKGRVFLEESSDDGRKFGKLKKDEFDGYNSDNHPRKNSPVTLDASHLDPQMAADNAPYDPSLSPLSKSPWSSHINEDAFVSNENEALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNEQQHKRVATLPTLRNYIKCSMKPSNYVEVRRHRNVLWIKHYDAISCLSITEDHSLIYSASWDKTFKVWRTANFKCLESVTAHDDAVNALVVGPEGLVFTGSADGTVKIWRREAQGKTTKHFFSQTLLKQECAVTALAINVEGNLLYAGSSDGLVNFWVRGAKFEHKGVLRGHKLAVLCLATAGGLVFSGSADMSICVWRRTLSDEHTCVNVLSGHTGPVKCLAAERDPDAMCNERKWILYSGSLDKSVKVWKVSENAAAPTNVQLPRLSADQFPRSSSLRKMGSRRY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01416 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 278 - -
Cca06g01416 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 430 IPR001680 GO:0005515
Cca06g01416 456 MobiDBLite consensus disorder prediction 1 48 - -
Cca06g01416 456 Gene3D - 291 436 IPR015943 GO:0005515
Cca06g01416 456 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 432 IPR045182 -
Cca06g01416 456 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Cca06g01416 456 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Cca06g01416 456 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Cca06g01416 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 326 IPR001680 GO:0005515
Cca06g01416 456 SUPERFAMILY WD40 repeat-like 96 425 IPR036322 GO:0005515
Cca06g01416 456 MobiDBLite consensus disorder prediction 10 36 - -
Cca06g01416 456 Pfam WD domain, G-beta repeat 298 326 IPR001680 GO:0005515
Cca06g01416 456 Pfam WD domain, G-beta repeat 376 421 IPR001680 GO:0005515
Cca06g01416 456 Pfam WD domain, G-beta repeat 209 237 IPR001680 GO:0005515
Cca06g01416 456 Pfam WD domain, G-beta repeat 335 367 IPR001680 GO:0005515
Cca06g01416 456 Pfam WD domain, G-beta repeat 100 126 IPR001680 GO:0005515
Cca06g01416 456 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Cca06g01416 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Cca06g01416 456 CDD WD40 100 421 - -
Cca06g01416 456 Gene3D - 202 290 IPR015943 GO:0005515
Cca06g01416 456 SMART WD40_4 127 164 IPR001680 GO:0005515
Cca06g01416 456 SMART WD40_4 331 368 IPR001680 GO:0005515
Cca06g01416 456 SMART WD40_4 89 126 IPR001680 GO:0005515
Cca06g01416 456 SMART WD40_4 374 421 IPR001680 GO:0005515
Cca06g01416 456 SMART WD40_4 200 238 IPR001680 GO:0005515
Cca06g01416 456 SMART WD40_4 241 279 IPR001680 GO:0005515
Cca06g01416 456 SMART WD40_4 288 327 IPR001680 GO:0005515
Cca06g01416 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 278 IPR001680 GO:0005515
Cca06g01416 456 Gene3D - 83 201 IPR015943 GO:0005515
Cca06g01416 456 PANTHER BNAANNG11810D PROTEIN 4 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01416 Cca-Chr6 29027332 29029572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01416 149 428 Acyl Lipid Metabolism Gene Families AT3G18860 27.907 1.22e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01416 - - gmx:100778593 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01416 06 29027332 29029572 Cca06g01416 06 29027332 29029572 ECH