Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01394 ATGCCAATGCACTTGAGGTCGTTCTTTTGCGAGGCTAACCTGTTGAACAGGTTAACCTTGCAAGTGCAAGCTCGTTCCTATGCCCGTTGTCGTGAACCATTTGCCACCAAAGTTTGTCACTACCTCAACCGTGCCAAACTCATTGACTCCATTAGACTCACTCTTCGCTCCAACACTCCCAACTCCTCCCTTCCTTCTCTCATAAACCACCGTCTTTTGGACTCTTTTGTGGTCACTCACGCCCTTCGTTCTGCCCCTTCTGCAGATTCCGCTCTATCCCTTGTCCATGCCCTTCAAGATAATTCCCGTTTTTCCCACACCCAGAACACACTCCATGCACTTGCCACTGTGCTTGCCAAGTCTGGTCGACGCTCTGAGCTCAAATCTCTCCTTCATGATATCCGAGCCAACCGGTTTGGCACTGTTAGGATTAGCTTTATGAATCTCATGCAGTGGCATGCTGCAGCTGGGGACCTTGACACTGTTCTTCAAGCGTGGGAAAAGTATACACTAGAGAATAATCATCTCTGTGCTGAATCTTATAACATTGTTTTGGCTCTTTATGCACAGAAGGGAAAGGACTCTGAGGCTGTTACAGTTTTTCACAGGATGATTGAAGAAGGGTCTCTTCCGAATTGCAGAACCTATACTGTAATAATTGAACACCTCGTGAAGTGCCGGAGGTTATCAGAAGCAATGGAGGTTTTTAACCTGTTGCCTTTGATGAGGATCAAACGCACTTTGAAACAGTACTCCGTTCTGGTTGAGGGTTTTGTAGCTAGCAAACGCTTTGATGAAGCCATGGTTTTAGTTGAGGAGATGCAAGTTGATGGAATATTGCCTAGTAGAGGCATGGGTTTGTTGCTGCAGCAGATGAAGAAGGAAGTGGTTCTTAAAGACAAGGAGCAATTGTTAAGAGAAATTTTGCCTGATGAGAGAATCAGGAGTGTAAGTTATTCTATtgatagtggtgatgaggatgaaggagagaatgagaatgatggtgaagatgaGAATATAACTGGTGCCTGTCAATGTGATCATATTGATGGGATTCAATTAAAACCATGGCTGGACCCACGGGCTCTGGTCAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACAAGATTGGTCTGCAAGATGCTTAGGAATTTCAAAACGCCAGAAGCTGCATGGAATTTCTTCTGCTGGGTTGCTAGTCAACATGGATTTAGTCATGACATATACACAGTACAAAGAATTATGACCCTTCTAGCACGCCATGGACGCAATGACTTGGTTGATGGACTCATCTCCAAGATCAGAAGGGAGGGAATGAGACTACCATGCAGCACCATCAGACTAATCCTTGATTTTTATGGGATCTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGATGATCGAGTACTTTGCGGGCCCATATCAAAGGTTAACCTGATGCTTCTGTATTCCTCTCTTCTAAGAACATTAACGAAGTGTGGAAGGAATTCTGAGGCCCTGGATATGCTTGATGATATGATTCTAAATGGTATTTGCCCAGATATGCAGACATTTTCAGGCCTGATGCACTATTTTTCACAGCTTGGAGACATAAAAACAGTGCAAAAGCTCTTTTCAATGGTTAGACAGAGCGGTCTAGAGCCAGATGCTTATTTATATAAGGTATTAATCCAAGGTTATTGCAAGTCAAAAAGAGCTGCTCTAGCGTGGAGGCTATTTGAAGACATGAAGAATTCAGGTGTGATGCCTGACTCTGCCACCAAAGATTTACTGGTAAAGAGCCTCTGGCAAGAGGGGAGACGGAGAGAGGCTGCAGCAGTGGAAGAGAGTTGTGAGGAAATAAATACAGTCCTTCCACATGCATTGCAGGGTCATGTGTGGACTGTCAGCTCTGCAGATCTCACTAGAGTTTATGATATTTATTCAAATTCTTTTGCTTAA 1983 0.4317 MPMHLRSFFCEANLLNRLTLQVQARSYARCREPFATKVCHYLNRAKLIDSIRLTLRSNTPNSSLPSLINHRLLDSFVVTHALRSAPSADSALSLVHALQDNSRFSHTQNTLHALATVLAKSGRRSELKSLLHDIRANRFGTVRISFMNLMQWHAAAGDLDTVLQAWEKYTLENNHLCAESYNIVLALYAQKGKDSEAVTVFHRMIEEGSLPNCRTYTVIIEHLVKCRRLSEAMEVFNLLPLMRIKRTLKQYSVLVEGFVASKRFDEAMVLVEEMQVDGILPSRGMGLLLQQMKKEVVLKDKEQLLREILPDERIRSVSYSIDSGDEDEGENENDGEDENITGACQCDHIDGIQLKPWLDPRALVSALRNWSPDEVAALEGANFVWTTRLVCKMLRNFKTPEAAWNFFCWVASQHGFSHDIYTVQRIMTLLARHGRNDLVDGLISKIRREGMRLPCSTIRLILDFYGISKNADAALKVFNDDRVLCGPISKVNLMLLYSSLLRTLTKCGRNSEALDMLDDMILNGICPDMQTFSGLMHYFSQLGDIKTVQKLFSMVRQSGLEPDAYLYKVLIQGYCKSKRAALAWRLFEDMKNSGVMPDSATKDLLVKSLWQEGRRREAAAVEESCEEINTVLPHALQGHVWTVSSADLTRVYDIYSNSFA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01394 660 Pfam PPR repeat family 562 609 IPR002885 -
Cca06g01394 660 Pfam PPR repeat family 180 224 IPR002885 -
Cca06g01394 660 Gene3D Tetratricopeptide repeat domain 79 329 IPR011990 GO:0005515
Cca06g01394 660 MobiDBLite consensus disorder prediction 323 337 - -
Cca06g01394 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Cca06g01394 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Cca06g01394 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Cca06g01394 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Cca06g01394 660 Gene3D Tetratricopeptide repeat domain 381 486 IPR011990 GO:0005515
Cca06g01394 660 TIGRFAM PPR: pentatricopeptide repeat domain 215 239 IPR002885 -
Cca06g01394 660 TIGRFAM PPR: pentatricopeptide repeat domain 566 598 IPR002885 -
Cca06g01394 660 TIGRFAM PPR: pentatricopeptide repeat domain 251 282 IPR002885 -
Cca06g01394 660 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Cca06g01394 660 TIGRFAM PPR: pentatricopeptide repeat domain 497 528 IPR002885 -
Cca06g01394 660 MobiDBLite consensus disorder prediction 320 339 - -
Cca06g01394 660 Pfam PPR repeat 251 279 IPR002885 -
Cca06g01394 660 Pfam PPR repeat 497 525 IPR002885 -
Cca06g01394 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Cca06g01394 660 Gene3D Tetratricopeptide repeat domain 490 648 IPR011990 GO:0005515
Cca06g01394 660 PANTHER OS01G0167750 PROTEIN 3 659 IPR044175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01394 415 645 Glycosyltransferase AT1G05670 27.039 1.10e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01394 - - gmx:100779372 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01394 06 28824696 28827646 Cca06g01394 06 28824696 28827646 ECH