Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01381 ATGAAGGAGATGATGATGGGTCTCTTACAATTACAGGATCCGCCATGGTCGCAGCTTCGGACACCTTTGTCTGATTTCCTCTTTCTTTGGATTCCACTTCTCATGGGACTGAGTCGAACTTCAAGACCTGTTCTTCCATCCAAATCTCCATTTCATAGTCCCTCACATTCTCGCTCTAAAACCATGAAGACAACACAGATCTTTGGTGTGTCTCTGTCGCTCATTCTTATCAACTTGGCTGCTATTATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAAGAAGTTAGTGAAACATTTAATGCAGGACCATCTGATTTGGGTTACCTCACATTCATAAGGAACTTTGTTCAGGGATTGTCATCTCCTCTGGCTGGTATACTTGTTATCAACTATGATCGCCCAACAATTCTTGCTGTGGGCACTTTCTGCTGGGCTTTATCTACAGCTGCTGTGGGTGTTTGCCACGATTTTCTTCAGGTTGCATTCTGGAGAGCAATAAATGGCTTTGGTTTGGCAATTGTGATTCCAGCACTTCAGTCTTTCATTGCTGATAGCTACAAGGATGGAGTGAGAGGAACTGGATTTGGATTGCTGAGCCTTATTGGTAACTTAGGAGGCATAGGAGGTGGTGTTTTGGCTACTGTCATGGCTGGACAACAGTTTTGGGGCATTCAAGGATGGAGATGTGCCTTCATTTTGATGGCAACTTTGAGTGCATTAATTGGATTCCTTGTTTTACTATACGTTGTTGATCCAAGAAAAAGACTTCCCGCCACTCGTGATGCTCTTGAGAGTTCAGACAGGGTTGACTCTATCTATAAAGGCAATGCTAGTGCAGCGTCAGTTTGGATTGATTCTTGGGCAGCCACGAAAGCAGTGATCAAAGTGCAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCATGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGGTTTTGATAACAATACGTCAGCAACTCTCCTGAGTCTTTTTGCTATTGGATGTGCTATGGGCTCCTTCATTGGTGGATCAATAGCTGATCAATTATCACAAGTGTACCCTCATTCTGCTCGTATCATGTGCGCACAGTTTAGTGCCTTTATGGGCATTCCATTCTCATGGATTCTTCTTAAGGTGATCCCTCAGTCAGTAAGTAGTTTCCTTACCTTCTCTGTCACCCTCTTTATAATGGGTCTGACTATCAGCTGGAACGGTGCGGCTGCCAATGCTCCTATGTTTGCTGAGGTAGTTCCCGTCAAACACCGTACCATGATTTATGCATTTGATCGAGCTTTCGAGGGCTCGTTTTCTTCTATTGCGGCTCCTTTGGTTGGGATTCTTTCTGAGAAAATGTTTGGTTATGACTCAAAGTCTGTTGATCGCATCAAAGGATCTACACCAGAGGCTCTTGCCTTGTCAAAGGGCCTTCTTTCAATGATGGCTGTTCCATTTGGATTGTGTTGTTTATGCTACACCCCTCTATATTACGTATTTAAGCGGGACCGTGAAAATGCTAGAATGGTTGCAGTGAAAGAGGAGGAGATGATGTGA 1587 0.4373 MKEMMMGLLQLQDPPWSQLRTPLSDFLFLWIPLLMGLSRTSRPVLPSKSPFHSPSHSRSKTMKTTQIFGVSLSLILINLAAIMERADENLLPSVYKEVSETFNAGPSDLGYLTFIRNFVQGLSSPLAGILVINYDRPTILAVGTFCWALSTAAVGVCHDFLQVAFWRAINGFGLAIVIPALQSFIADSYKDGVRGTGFGLLSLIGNLGGIGGGVLATVMAGQQFWGIQGWRCAFILMATLSALIGFLVLLYVVDPRKRLPATRDALESSDRVDSIYKGNASAASVWIDSWAATKAVIKVQTFQIIVLQGIIGSLPWTAMVFFTMWFELIGFDNNTSATLLSLFAIGCAMGSFIGGSIADQLSQVYPHSARIMCAQFSAFMGIPFSWILLKVIPQSVSSFLTFSVTLFIMGLTISWNGAAANAPMFAEVVPVKHRTMIYAFDRAFEGSFSSIAAPLVGILSEKMFGYDSKSVDRIKGSTPEALALSKGLLSMMAVPFGLCCLCYTPLYYVFKRDRENARMVAVKEEEMM 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01381 528 Gene3D MFS general substrate transporter like domains 68 262 IPR036259 -
Cca06g01381 528 Gene3D MFS general substrate transporter like domains 297 525 IPR036259 -
Cca06g01381 528 CDD MFS_spinster_like 74 503 IPR044770 -
Cca06g01381 528 SUPERFAMILY MFS general substrate transporter 69 516 IPR036259 -
Cca06g01381 528 Pfam Major Facilitator Superfamily 79 411 IPR011701 GO:0022857|GO:0055085
Cca06g01381 528 ProSiteProfiles Major facilitator superfamily (MFS) profile. 73 514 IPR020846 GO:0022857
Cca06g01381 528 PANTHER SPINSTER 63 528 IPR044770 -
Cca06g01381 528 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 63 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01381 Cca-Chr6 28697368 28701999 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01381 - - ccaj:109799958 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01381 06 28697368 28701999 Cca06g01381 06 28697368 28701999 ECH