Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01379 ATGGTAACAACAAAGCCACATGCAGCACTTTTGGCCAGCCCCGGCATGGGCCACTTGATCCCCATGGTGGAGCTAGGGAAGCGCCTCCTCACTCACCACGGCTTCCACGTCACCCTCTTCGTCGTCACCACCGATTCCTCCACCACAACTCAGCTTCTCCACCAAACATCAAACCTAAACTCCCTCAACATCGTCCAAGTCCCTCCCATCGACGTCTCCCACAAGCTCCCACCCAACCCACCTTTAGCCACACGAATAACGCTAACCATGATGGAGTCCATACCCTTTCTACGCTCCTCCATCTTATCCATGAACAACCCTCCTCCTTCATCTCTCATCGTAGACATGTTCGGCCTCGTCGCTTTTCCCATGGCACGTGACCTCGCCATGCTCACCTACGTCTTCTTCGCCACCAGCGCATGGTTCTCCGCGGTTACTCTATACTTTCCCTTCATGGATAAAAAAACGATGGAGAGCCACGCCCAGAATCACGAACCGCTTCTGGTTCCGGGTTGCGAACCGCTTCGGTTCGAGGACACGCTCGAACCGTTTTTGTTTCCGGGAGGGGACGTGTACGAGGGTTACCTCGAAGCAGCGAAGGCGATTGTAACCGCGGACGGGATCCTGATCAACACGTGGCAAGATCTGGAGCCTGCTGCCACCAAGGCGGTTAGGGAGCATGGGAGTTTGGGGCGGTTCGTGTATCCGGTTGGACCGTTGGTGAGAACCGTAGAGAGGAAACAGGAGCACGAGGTTTTGCGTTGGCTGGACCGGCAACCGGGTGAGTCGGTTATCTACTTGTCGTTCGGGAGCGGTGGGACCCTGTCGGAGGAGCAAATGAGGGAGGTGGCGTTTGGGTTGGAGCTGAGTCAGCAGAGGTTTGTTTGGGTGGTGCGGCCGCCCAACGAAGACGCCAGTGGCTCGTTTTTCGACGTGGCGAGCGGTGGTGACGTGGCGGTTGGTTACTTACCGGAAGGGTTTGTGAAAAGGACAGAAAATGTGGGGTTTGTGGTCCCGATGTGGGCCCCGCAGGCTGAGATACTTGGACATCCTGCGACGGGTGGTTTCGTGACGCACTGTGGTTGGAATTCCGTTTTGGAGAGTGTCCTGAACGGCGTTCCCATGGTGGCGTGGCCCCTTTACGCGGAGCAGCTGATGAACGCTTTTATGCTGTCGGGGGAGCTGGGGGTGGCGGTGCGGGTGGCGTCGGAGGAGGGCGGAGTAGTGCGGCGGGAACAGGTGGCGGAGTTGGTGAGAAGAGTGATGGTGGGTTCAGAGGGTGGTGCTATGAGGAAGAAAGTGAAGGAGGTGAAAGTGAGCGGAGAGAAGGCATTGTCTTCTCGTGGTTGGCTTTGTGAAATGAGCAAGAACTGTGAACTTCATCTTCAGGCTAAAGTTTCCGCTGCTTAA 1410 0.566 MVTTKPHAALLASPGMGHLIPMVELGKRLLTHHGFHVTLFVVTTDSSTTTQLLHQTSNLNSLNIVQVPPIDVSHKLPPNPPLATRITLTMMESIPFLRSSILSMNNPPPSSLIVDMFGLVAFPMARDLAMLTYVFFATSAWFSAVTLYFPFMDKKTMESHAQNHEPLLVPGCEPLRFEDTLEPFLFPGGDVYEGYLEAAKAIVTADGILINTWQDLEPAATKAVREHGSLGRFVYPVGPLVRTVERKQEHEVLRWLDRQPGESVIYLSFGSGGTLSEEQMREVAFGLELSQQRFVWVVRPPNEDASGSFFDVASGGDVAVGYLPEGFVKRTENVGFVVPMWAPQAEILGHPATGGFVTHCGWNSVLESVLNGVPMVAWPLYAEQLMNAFMLSGELGVAVRVASEEGGVVRREQVAELVRRVMVGSEGGAMRKKVKEVKVSGEKALSSRGWLCEMSKNCELHLQAKVSAA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01379 469 Gene3D Glycogen Phosphorylase B; 7 449 - -
Cca06g01379 469 Gene3D Glycogen Phosphorylase B; 250 446 - -
Cca06g01379 469 PANTHER UDP-GLYCOSYLTRANSFERASE 72C1 3 459 - -
Cca06g01379 469 PANTHER GLYCOSYLTRANSFERASE 3 459 - -
Cca06g01379 469 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 448 - -
Cca06g01379 469 CDD GT1_Gtf-like 6 438 IPR002213 GO:0008194
Cca06g01379 469 ProSitePatterns UDP-glycosyltransferases signature. 341 384 IPR035595 -
Cca06g01379 469 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 250 393 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01379 Cca-Chr6 28668035 28669719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01379 1 449 Glycosyltransferase AT3G50740 50.866 4.22e-160 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01379 K12356 - gmx:100781979 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01379 06 28668035 28669719 Cca06g01379 06 28668035 28669719 ECH