Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01378 ATGGAAGACACGCTTTCGAAGTTGAGGTCTTTGATGGCTTCTCACTCTCCCCCGCTTGATGCCTTAGTCGTTCCCTCCGAAGATTATCACCAGAGCGAATACGTATCTGCACGAGACATGCGCCGCCAATTCGTTTCCGGCTTCACCGGAAGTGCTGGCTTGGCCCTTATAACAAAGAATGAAGCACTGCTGTGGACCGATGGGCGATATTTTTTGCAGGCTGAACAAGAACTTAGTGATCAGTGGAAGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATACCTGGATGGCTGATAATTTGCCAAAAGAGGCTTCCATTGGGGTTGACCCTTGGTGCATTTCAATTGATACTGCCCAAAGATGGGAGCGTGCTTTTGCCGAAAAACAGCAGAAGCTGGTTCAAACCACAAAAAATTTGGTAGATGAAGTTTGGATAAATCGCCCACCAGAAGAGATTAATGCTGTTATTGCACATCCACTGAAATTTGCAGGTCGCTCTGTTGCAGATAAGTTGAAAGATTTGAGAAAAAAACTTTTACAGGAGCAAGCCCGTGGGATAATTTTCACAGCGCTTGATGAAGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGGACAAGCGAAAGGTTTCTGCTGAGGTACAAACTCATTTAGTGGAGAATGGAATTGAAATTCGAGAGTATAGAGCTGTGAGCTCCGATGTGACATTGCTTGCAACTGATGAGCTTGATGCTATATCTACTGACAAGAGAGTAAATGGTGAACATCAAGCACAAGAAAATAAGAATGACCTCATATGGGCTGATCCAGGTTCATGTTGTTATGCACTGTATGCAAAGTTGAATCCTGATACAGTTCTCTTGCAGCAATCACCTTTGGCCCTTGCAAAAGCTTTAAAGAACTCGGTGGAAATGGATGGGTTAAAAAAGGCACATATTCGAGATGGTGCAGCAGTTGTGCAATACCTTGTTTGGCTGGATAAGAAGATGCAGGATATTTATGGAGCTTCTGGTTACTTTTTGGAGAAGGATTCTGTGAAAAAGGAGAAGCATTTGCAGTCCGGAAAATTGACTGAGGTGACTGTAAGTGACCAACTTGAAGGTTTTAGAGCATCAAAAGAGCATTTCAGAGGATTGAGTTTCCCCACTATTTCCTCGGTTGGCCCAAATGCAGCTATCATCCATTATTCTCCAAAGGCAGAAACCTGTGCCGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGTATCTAGATGGAACAACAGATATTACACGAACAGTTCATTTTGGGAAACCTTCTGCTCATGAAAAAGCGTGTTATACAGCGGTCCTTAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGAACTAATGGTCACGCCCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGatggtcttgattatcgacatggtactggtcatggtATTGGGTCCTATCTGAATGTTCATGAAGGACCTCACTTAATCAGTTTCAGACCACATGCTCGAAATGTACCGTTGCAATCCTCCATGACTGTTACAGATGAACCTGGTTACTATGAAGATGGGGAGTTTGGGATAAGATTGGAGAATGTGCTTATTATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAAGGTTACTTATCTTTTGAGCACATTACCTGGGCACCATATCAAGCGAAGTTGATTGACCTGAACCGTCTAAATCCTGACGAGATAAATTGGCTGAACTCCTATCACTCCACATGTAGAGATATTCTGGCGCCATACTTGGATGAAGTTGAAAATGCATGGCTGAAGAAAGCCACTGAACCTGTAGCGGCATGA 1923 0.4212 MEDTLSKLRSLMASHSPPLDALVVPSEDYHQSEYVSARDMRRQFVSGFTGSAGLALITKNEALLWTDGRYFLQAEQELSDQWKLMRIGEDPAVDTWMADNLPKEASIGVDPWCISIDTAQRWERAFAEKQQKLVQTTKNLVDEVWINRPPEEINAVIAHPLKFAGRSVADKLKDLRKKLLQEQARGIIFTALDEVAWLYNIRGSDVAYCPVVHAFAIVTSNSAFIYVDKRKVSAEVQTHLVENGIEIREYRAVSSDVTLLATDELDAISTDKRVNGEHQAQENKNDLIWADPGSCCYALYAKLNPDTVLLQQSPLALAKALKNSVEMDGLKKAHIRDGAAVVQYLVWLDKKMQDIYGASGYFLEKDSVKKEKHLQSGKLTEVTVSDQLEGFRASKEHFRGLSFPTISSVGPNAAIIHYSPKAETCAELDPDKIYLFDSGAQYLDGTTDITRTVHFGKPSAHEKACYTAVLKGHIALGNARFPNGTNGHALDILARIPLWKDGLDYRHGTGHGIGSYLNVHEGPHLISFRPHARNVPLQSSMTVTDEPGYYEDGEFGIRLENVLIIKEADTKFNFGDKGYLSFEHITWAPYQAKLIDLNRLNPDEINWLNSYHSTCRDILAPYLDEVENAWLKKATEPVAA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01378 640 Pfam C-terminal region of peptidase_M24 579 637 IPR032416 -
Cca06g01378 640 Gene3D - 1 145 IPR029149 -
Cca06g01378 640 Pfam Metallopeptidase family M24 370 567 IPR000994 -
Cca06g01378 640 Pfam Creatinase/Prolidase N-terminal domain 147 326 - -
Cca06g01378 640 Coils Coil 119 139 - -
Cca06g01378 640 Pfam Creatinase/Prolidase N-terminal domain 5 142 IPR000587 GO:0016787
Cca06g01378 640 SUPERFAMILY Creatinase/aminopeptidase 324 604 IPR036005 -
Cca06g01378 640 PANTHER XAA-PRO AMINOPEPTIDASE 1 2 639 - -
Cca06g01378 640 SUPERFAMILY Creatinase/prolidase N-terminal domain 40 132 IPR029149 -
Cca06g01378 640 ProSitePatterns Aminopeptidase P and proline dipeptidase signature. 507 519 IPR001131 -
Cca06g01378 640 PANTHER AMINOPEPTIDASE P1 2 639 - -
Cca06g01378 640 CDD APP 329 575 IPR033740 GO:0070006
Cca06g01378 640 Gene3D Creatinase/methionine aminopeptidase superfamily 320 639 IPR036005 -
Cca06g01378 640 Gene3D - 146 318 IPR029149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01378 Cca-Chr6 28643727 28654589 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01378 K01262 - gmx:100803268 1189.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01378 06 28643727 28654589 Cca06g01378 06 28643727 28654589 ECH