Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01366 ATGGACTTGGACGACTTAGAAGAGCTGGCCAAGGCCCCTGCTCGAGTCTCCAAGTTCGCGCCAAAATCATCTAAGCTcaaacccaaaccgaaatcggaacctgcacccaaaccagaaccccaaccccaacccTCCATCTGCAAACCAGAGCCACAAGAGTTCGTTACAACTGTCAAAAAGAATGAAGATGGTGTGGAAACCGTGGCATCAACTCAAATTAAGCTTGAACCCAACAACACTGTCAAAATGGACATTGAACCTAAATCTGAGACTCAAGACGAACCAGAACAAGAAGATCCCATGGATGTAGATAGTGCTGAAGACACAGTTGTGCGTGAAATTGATGTCTTCTTCTCACCTTCTATTGATGCCGAGACTCAGTTATACGTTTTGCAGTATCCATTAAGACCTTCTTGGCGACCGTATGAATTAGATGATGAGCAAGGCACAGAGGTAAGGTTGAAGCCTAGTAGTTCTGAAGTGGAAATTGATTTACCTATCGATCTTGATTCACCTAATATTGACAAAGAGTTTGCCAACAAATACAACTACACGAAGCAGACTTTATCAACAAAGTGGAAGCCATCTCCTGCCAATGGGTGTGCTGTTGGGCTTCTTATGGGTGATAAGTTATACCTGCATCCAATTCATGCAGTAGTGCAACTCCGACCGTCATTACAACATCTTAATTCTGGTGTTTCAAAAAGGAAGAACATTATCTCTGCTGAAGCAAATGCTACCGTGGGCTCAAATGAAGAAAAGTCTATTGCTACTTCAAAGAAGCAGAATAAGCAGACAGAAACTTCTATTGAGCAAAAGGGTGACAGTGATGAGCGCTGGGTTCCTCTAAAGTACCACACCTCTAATAGTGATATCTCCTCTAGATATCTGCAGCAAATGGTGGTACAAGAAAGTTCTCCCATAAACTTTACAATGAGAGCGGATGATTATGTTGATGCACTGTGTCCTGGAGTGAGCAGCAACAATTTACCAAAGGGTCCTTCTAAAAGGGATCTTCTATCATTGCCTATTGAAGAACGGCTTAAGAAAATGCTTGAGAGTCGTCCACTTCATCGTTTCAGTGCTATTAAGCACTTTGCTCCTGAATACTCTGAGGAGGAACTTCTAAGATTCCTGCAGCAGCATGCAGTATTGATTTGGGGACTATGGACTGCAAAAAGTTCATTGCTCTATCCTCACGGTGGTGTGGAAACTTTTTCCAGAGATTATGCCCTACTATTGTTTAGCAAGAATTTGAAAGTTCAGTCTTCTGATGTGAATGTTCGAGGTGAAGTTGGTACTCATGTGAAGAACTTCCTAAAGATATTTGGCTTGGAAAGATATGATCTTAGTAAATCTACTGGACAATCAGTTCCTCACTGGAAGTTCAGAGAGCTTCCTGATGAGTCATTCAAAAAGCAGTATCCAAATATTGTTGAAAAACAGGAAGAACTTTTCAAAGGTTTGGAACAGTTATCTGGTTATGCTTCTAATGCAGGGAAACGTAAAATTGGAAAAAATGCTGTAGCAAACCAAGGTGTGAACAATGAGCTTATTAAATCAGAAAGTTCTGATCAACGGATATCAAGTCTGGGTCGAGTGCCTCCTGGGAGAATGACCATGTCAAATGAGACCCGACATGCTCTGCCAATTGCTCTCAAGAAACTTTTTCAGACTCACAAAGTTTGCAGCTTCCAAATGATATGCCAAGGATTGCGTGAAATGGCAGTTTCCAAAACTATGCTTTCGAAGGGAGATTCTAAAATTGCTGTGGATGCAGCTCATAGTCTTGATGGTCCAGATAACGAGTTGAAGGCTGTCATCAGTGAAGTTGCATGTGATATCCATGGTTATTATGTGTTGAAATCATCACAAGATGAACCATTCAGAGATGTTGTAATTGATTTGTTTCGTGGAATGGGGTCCCAGGCCAAGCTGAAGAAGGCCGAGATACTTGAAGCTGCAAGGAGAAAACTCAGTAGGGAGGTTACTAACAGTGAATATATCAAGGTGATGAGTGAGTTATGTGTCTCAAAAGGTTCTGTTTGGGTGTTGAGAAGCGGAGATGGAAGTTTGCAATGA 2082 0.4044 MDLDDLEELAKAPARVSKFAPKSSKLKPKPKSEPAPKPEPQPQPSICKPEPQEFVTTVKKNEDGVETVASTQIKLEPNNTVKMDIEPKSETQDEPEQEDPMDVDSAEDTVVREIDVFFSPSIDAETQLYVLQYPLRPSWRPYELDDEQGTEVRLKPSSSEVEIDLPIDLDSPNIDKEFANKYNYTKQTLSTKWKPSPANGCAVGLLMGDKLYLHPIHAVVQLRPSLQHLNSGVSKRKNIISAEANATVGSNEEKSIATSKKQNKQTETSIEQKGDSDERWVPLKYHTSNSDISSRYLQQMVVQESSPINFTMRADDYVDALCPGVSSNNLPKGPSKRDLLSLPIEERLKKMLESRPLHRFSAIKHFAPEYSEEELLRFLQQHAVLIWGLWTAKSSLLYPHGGVETFSRDYALLLFSKNLKVQSSDVNVRGEVGTHVKNFLKIFGLERYDLSKSTGQSVPHWKFRELPDESFKKQYPNIVEKQEELFKGLEQLSGYASNAGKRKIGKNAVANQGVNNELIKSESSDQRISSLGRVPPGRMTMSNETRHALPIALKKLFQTHKVCSFQMICQGLREMAVSKTMLSKGDSKIAVDAAHSLDGPDNELKAVISEVACDIHGYYVLKSSQDEPFRDVVIDLFRGMGSQAKLKKAEILEAARRKLSREVTNSEYIKVMSELCVSKGSVWVLRSGDGSLQ 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01366 693 MobiDBLite consensus disorder prediction 13 52 - -
Cca06g01366 693 MobiDBLite consensus disorder prediction 73 105 - -
Cca06g01366 693 MobiDBLite consensus disorder prediction 247 278 - -
Cca06g01366 693 MobiDBLite consensus disorder prediction 247 265 - -
Cca06g01366 693 Pfam RPC5 protein 107 491 IPR006886 GO:0005634|GO:0006351
Cca06g01366 693 PANTHER DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 95 485 IPR006886 GO:0005634|GO:0006351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01366 K14721 - gmx:100780965 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01366 06 28499310 28510400 Cca06g01366 06 28499310 28510400 ECH