Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01358 ATGAAGGATGAGGAGGGGCTTCCGACTACGACAACCGTCGCCAAGAAGGAAGCGTTGGATTCGGGTCTGTTTGGGAAAGGAAGGTACAAATTCTGGGCACTAGCGGCGATCTTGCTTCTCGCGTTTTGGTCCATGTTCACCGGCACCGTCTCTCTCCGCTGGTCCGGCACGCTCAATTCCCTCACCAACGACATCGACGCTCCCATCCACGACGACCTCGACGTTCTCGAAATGGAAGAGAGGGAGAAGGTGGTGCGGCACATGTGGGATGTTTACACCAACAGTCGCAGAATCAGGTTGCCCAGGTTCTGGCAAGAGGCATTCGAAGCGGCATATGAAGAATTGACGAGTGATGTCGCTGAGGTCAGAGACGACGCCATCACTGAGATCGCCAAGATGTCTGTTCGCTCCCTTCATTTTGATCCACCTCCTCTTCAATCTACGAGTGCCCGAGAATTTAGCAAGAGCCTTAAGCAAGCCGATAAAGGAAAAGAAGCAAAGCTGCAGTCGCATCCGCACCACGTGTTCCACCTGCGCGCCCAAGACAACCCTCTGTGCCTGGTCACATCGGATCTCCCCCTCCCCACACTCCACCAAAACGACGAGGACCCTTTCGAGCCCACGGGCTTCATCACCGCCTTCTCCACCTGGGCCCTCGAGCCCAGCCCACTCTACCTCCAGTCCTCCCTCTCCTTCTCCGGCCACCTCGCCGAGCTCGAGCGCACTCTCGAAtcctcctcttcctcttcctccgccacctcctcctcctcttcgtcctccACGGTGGTTGTTGATAATTTGAGGGCCTACATGCAGATTATCGATGTAGCGTCGATTCTAGGGTTGGACTGCGACATTTCCGACCACGCTTTTCAGTTGTTCAGGGATTGCTGCTCCGCCACGTGTTTGAGGAACCGCAGTGTGGAGGCGCTTGCCACTGCCGCTCTCGTTCAGGCCATTAGAGAGGCTCAAGAACCCAGAACCCTTCAGGAAATTTCAATTGCAGCCAATGTGCCACAAAAGGAAATTGGTAAATACATCAAGATACTGGGAGAGGCTTTGCAGCTAAGTCAACCAATTAACAGCAATTCCATTTCAGTTCATATGCCAAGATTTTGCACACTCCTTCAGCTCAATAAATCTGCCCAGGAACTGGCTACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCAATTAGCATCTCAGCTGCTGCTATATATTTGGCTTGCCAACTTGAAGACAAACGCAAAACCCAGGCAGAAATTTGTAAGGTAACCGGTCTTACTGAAGTCACTCTGCGAAAAGTCTACAAGGAACTATTGGAGAATTGGGATGATTTGCTTCCCTCTAACTACACCCCAGCTGTTCCTCCAGAGAGGGCATTTCCCACGACTGTAATTGCTTCAGGTCGTTCTTCAACAGCCAAGGTTGATGTTGTGGAGATTATTTCTTCTTTGGACTCAGAAAAGTTGCCAGAAATTAAACCTAACAAACCTAATGATGTCTCAGCCATGGTTCATCATTCCAGAGGGAAGGATGAGGCTGAAGGCAAAAGCAATGCTCCCGCAAACCACTCCACACTGAATCAACAGTCAACTTTTTGGCAACCCCAGCTTCCCAGTGGGACACACAATCATCAGAATGTTTTACAAGGAATGGATATTGATGTATTGCAGCGTAACCACCAACAGCCTGAACACATGGCAGGGGAAACAAATGGTGCCGCCAATGGTAGTTCTCTAAAATCAAACCAACTTTGCTGTCCTCCTTCTTCCAGTGCAAACTCTGTTAAGAGGCCGTTTTCAGCTCCCCCTTCATCTGGGCCTTCAAATGTTAGATTAGTACAGTCACCCAAGACAATGCCAGGTTATCCGGAGCACTGA 1902 0.4905 MKDEEGLPTTTTVAKKEALDSGLFGKGRYKFWALAAILLLAFWSMFTGTVSLRWSGTLNSLTNDIDAPIHDDLDVLEMEEREKVVRHMWDVYTNSRRIRLPRFWQEAFEAAYEELTSDVAEVRDDAITEIAKMSVRSLHFDPPPLQSTSAREFSKSLKQADKGKEAKLQSHPHHVFHLRAQDNPLCLVTSDLPLPTLHQNDEDPFEPTGFITAFSTWALEPSPLYLQSSLSFSGHLAELERTLESSSSSSSATSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSTAKVDVVEIISSLDSEKLPEIKPNKPNDVSAMVHHSRGKDEAEGKSNAPANHSTLNQQSTFWQPQLPSGTHNHQNVLQGMDIDVLQRNHQQPEHMAGETNGAANGSSLKSNQLCCPPSSSANSVKRPFSAPPSSGPSNVRLVQSPKTMPGYPEH 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01358 633 Pfam Transcription factor TFIIB repeat 269 350 IPR013150 GO:0017025
Cca06g01358 633 Pfam Transcription factor TFIIB repeat 367 448 IPR013150 GO:0017025
Cca06g01358 633 MobiDBLite consensus disorder prediction 497 532 - -
Cca06g01358 633 PRINTS Transcription initiation factor IIB signature 339 354 IPR000812 GO:0006352|GO:0070897
Cca06g01358 633 PRINTS Transcription initiation factor IIB signature 434 448 IPR000812 GO:0006352|GO:0070897
Cca06g01358 633 PRINTS Transcription initiation factor IIB signature 313 332 IPR000812 GO:0006352|GO:0070897
Cca06g01358 633 PRINTS Transcription initiation factor IIB signature 368 386 IPR000812 GO:0006352|GO:0070897
Cca06g01358 633 PRINTS Transcription initiation factor IIB signature 402 418 IPR000812 GO:0006352|GO:0070897
Cca06g01358 633 MobiDBLite consensus disorder prediction 511 525 - -
Cca06g01358 633 Pfam Protein of unknown function (DUF1195) 8 144 IPR010608 -
Cca06g01358 633 SUPERFAMILY Cyclin-like 268 358 IPR036915 -
Cca06g01358 633 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 169 630 IPR000812 GO:0006352|GO:0070897
Cca06g01358 633 MobiDBLite consensus disorder prediction 571 633 - -
Cca06g01358 633 CDD CYCLIN 369 447 IPR013763 -
Cca06g01358 633 MobiDBLite consensus disorder prediction 571 623 - -
Cca06g01358 633 Gene3D - 367 463 - -
Cca06g01358 633 CDD CYCLIN 269 350 IPR013763 -
Cca06g01358 633 Gene3D - 267 358 - -
Cca06g01358 633 SUPERFAMILY Cyclin-like 365 463 IPR036915 -
Cca06g01358 633 SMART cyclin_7 271 352 IPR013763 -
Cca06g01358 633 SMART cyclin_7 367 448 IPR013763 -
Cca06g01358 633 Coils Coil 105 125 - -
Cca06g01358 633 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 169 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01358 Cca-Chr6 28430240 28438134 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01358 K03124 - gmx:102662353 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01358 06 28430240 28438134 Cca06g01358 06 28430240 28438134 ECH