Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01344 ATGGTGCACAGCGCGTACGATTGTGTGGAACTGGTGCGCGACGTCCCTACGAAGATCGAATCCATCCAATCCTACGGTTCCAAGCTTCTCGCCGGATGCTCCGATGGATCGCTCCGAATTTTCGCCGCCGAAGCGGAATCCTCCGACGGCTCCAAGTCCTACGCGCTCGAGAGGAACCTCCTCGGATTCGCCAAGAAGCCGGTGGTCTCAATGGCGGTGGTGGAATCGCGAGAGCTCCTCATATCGCTCTCCGAATCCATCGCCTTCCATAAACTCCCTTCCTTCGAGACCATAGCGGTTATCACCAAGGCCAAGGGCGCCAACGTCTTCTGCTGGGACCACCGCAGAGGATTCCTCTGCTTCGCTAGACAGAAGCGCGTTTGCGTTTTCAGACACGACGATGGCAGGGGATTTGTGGAGGTGAAAGAGTTCGGTGTGGTGGATACAGTGAAGTCTATGTGTTGGTGTGGTGAGAATATATGTTTAGGGATTAGAAGAGAGTATGTGATTCTGAATACTTCCACCGGAGCTTTGTCTGAGGTTTTTACTTCTGGGAGACTAGCGCCACCTCTGGTTGTTTCTCTTCCTTCTGGAGAGCTTCTCCTTGGAAAGGAAAACATTGGGGTTTTTGTGGACCAAAATGGGAAGCTTCTTCCCGAAGGTAGGATTTGTTGGTCAGAGGCTCCTTTGGAAGTTGTAATTCAGAAGCCGTATGCTATGGCTTTGCTGCCTAGATTTGTGGAGATTCGGTCTCTTCGAGCTCCTTATCCACTGATACAGACAGTTGTTCTTCGAAATGTTCGCCATCTTTCCCATAGCAATAATTCCGTGATACTTGCTTTGGATAATTCCATTCATGGCCTTTTTCCTGTTCCCCTTGGAGCCCAGATAGTCCAATTAACGGCTTCTGGCAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTTCTTCCACCTGAAGATTCAAGTCTCCGTGCCGCAAAGGAGGGGTCAATTCATATAAGATATGCTCATTATCTTTTTGACAATGGGAGCTATGAAGAGGCTATGGAACATTTTTTGGCATCTCAAGTAGATATAACCTATGTGCTTTCCCTGTATTCATCCATTATCCTTCCAAAGACAACTATTGTTCATGATCCAGAGAAGTTGGACATTTATGGGGATGCTTCATATCTCACAAGAGGTTCTTCAGGTGGGTCAGATGATATGGAACCCTCATCAACATCTCATATGTCAGAATATGATGAGTATGCAGCACTTGAATCCAAAAAAATGAACCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATTTAGTTTTATTGAGAAAGCCACTGCAGAAGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCTTACAATAGGCTTAAGAAAACAAACAAGGGGCGTGGTAATATATCTGTTAGTTCTGGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCATTACTTCTAACTGGACAATCTTCAGTCGCTTTAGAATTACTGAGAGGTGTTAACTACTGTGATTTGAAAATATGTGAGGAAATACTTCAAAAAGGCAACCATCATGTTGCTTTATTAGAACTTTACAAGCACAACTCGTTGCACCGGGAAGCTCTTGAACTCCTTCACAAATTGCTGGATGAGTCAAAATCTGGCCAGTCCGAAGTTAACCAAAGATTCAAGCCTGAGGATATTGTGGAGTATCTCAAGCCACTATGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCGATGCTTGTTCTTGAAAGCTGTCCATCTCAAACTATAGATCTCTTTCTGTCTGGAAATATTCCAGCAGATATGGTGAGCTCATATTTGAAGAAGCACTCTCCAAATATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCTGTATCTGGAAATTTGCAAAATGAAATGGTACACATCTATCTTTCTGAAGTACTCGAGTGGCATGCTGATTTAAGTGCTCATCAAAATTGGGATGAGAAAGCCTATTCCCCAACAAGGAAAAAATTATTATCTGCCTTAGAAAGTATAGCAGGATACAATCCAGAGGCTTTGCTAAAACGTCTTCCACCAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGGAAAATGAACCAACATGAACTGGCATTATCTTTGTATGTTCATAAGCTCAACACTCCAGAACTGGCATTGTCTTATTGTGATCGAGTCTACGAGTCTATGCAACAGCCTTCTGCAAAATCTTCCAGCAGCATATACCTTGTGCTTCTGCAAATCTATTTGAATCCTCGAAGGACCACAGCTGGTTTTGAAAGGAGAATAACAAATCTATTATCCCCACAGAATAAAACCATTCCAAAACTTACTTCTACACCATCCATGAAAACTAGAGGCCGAGGATCAAAGAAAATTGCTTCAATAGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACTGACAGTGGCAAGAGTGATGATGGTGATGCAGATGAATATAGTGAGGGTAGTTCTACTATCATGCTTGATGAGGTCCTTAATTTATTGAGCCGCCGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAAAGAGACAAAATTACAGGACCTGCTTTCATTTCTTGGGCCCCTTCTGAGAAAATCTAGTGAAATGCACCGAAATTGTTCGGTGATAAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTCTTTAGTCAGAGGAAAGCAGTTGTGAAGATAACCAGTGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACTAGTGTTTTCGCAGTCTACCCAAATGGTAGCACTCTCGTGCACTTTGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTAGGCAAAGGGTCTCAATTGAGGAAGCGATTATGA 2967 0.4341 MVHSAYDCVELVRDVPTKIESIQSYGSKLLAGCSDGSLRIFAAEAESSDGSKSYALERNLLGFAKKPVVSMAVVESRELLISLSESIAFHKLPSFETIAVITKAKGANVFCWDHRRGFLCFARQKRVCVFRHDDGRGFVEVKEFGVVDTVKSMCWCGENICLGIRREYVILNTSTGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPLEVVIQKPYAMALLPRFVEIRSLRAPYPLIQTVVLRNVRHLSHSNNSVILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQVDITYVLSLYSSIILPKTTIVHDPEKLDIYGDASYLTRGSSGGSDDMEPSSTSHMSEYDEYAALESKKMNHNMLMALIKYLQKKRFSFIEKATAEGTEEVVLDAVGDNFASYNRLKKTNKGRGNISVSSGAREMASILDTALLQALLLTGQSSVALELLRGVNYCDLKICEEILQKGNHHVALLELYKHNSLHREALELLHKLLDESKSGQSEVNQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIDLFLSGNIPADMVSSYLKKHSPNMQARYLELMLAMNENAVSGNLQNEMVHIYLSEVLEWHADLSAHQNWDEKAYSPTRKKLLSALESIAGYNPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLNTPELALSYCDRVYESMQQPSAKSSSSIYLVLLQIYLNPRRTTAGFERRITNLLSPQNKTIPKLTSTPSMKTRGRGSKKIASIEGAEDTKVSLSSTDSGKSDDGDADEYSEGSSTIMLDEVLNLLSRRWDRINGAQALKLLPKETKLQDLLSFLGPLLRKSSEMHRNCSVIKSLRQSENLQVKDELFSQRKAVVKITSDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVGKGSQLRKRL 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01344 988 Pfam Vacuolar sorting protein 39 domain 1 494 602 IPR019452 -
Cca06g01344 988 PANTHER VACUOLAR SORTING PROTEIN 39 1 987 - -
Cca06g01344 988 SUPERFAMILY WD40 repeat-like 23 183 IPR036322 GO:0005515
Cca06g01344 988 Pfam CNH domain 26 271 IPR001180 -
Cca06g01344 988 Pfam Region in Clathrin and VPS 623 752 IPR000547 GO:0006886|GO:0016192
Cca06g01344 988 MobiDBLite consensus disorder prediction 797 850 - -
Cca06g01344 988 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 597 784 IPR000547 GO:0006886|GO:0016192
Cca06g01344 988 MobiDBLite consensus disorder prediction 797 813 - -
Cca06g01344 988 ProSiteProfiles Citron homology (CNH) domain profile. 16 277 IPR001180 -
Cca06g01344 988 Pfam Vacuolar sorting protein 39 domain 2 862 970 IPR019453 -
Cca06g01344 988 PANTHER CNH DOMAIN CONTAINING 1 987 IPR032914 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01344 Cca-Chr6 28284971 28293395 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01344 K20183 - gmx:100805342 1764.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01344 06 28284971 28293395 Cca06g01344 06 28284971 28293395 ECH