Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01341 ATGGGTCTTCTGAGCATCATCAGGAAAATCAAGCGGAAAGAGAAGGAAATGCGAATTCTGATGGTCGGATTGGACAATTCCGGGAAAACCACAATCGTCCTAAAGATTAACGGAGAGGACACCAGCGTTATCAGTCCCACGCTCGGCTTCAACATCAAAACCATTACTTACCAAAAGTACTCCCTAAATATATGGGATGTTGGGGGCCAGAAAACAATAAGATCTTATTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGACAGTTCAGATCTCAGAAGGTTGGATGATTGCAAATTCGAGTTGGATAACCTTCTCAAGGAAGAGAGGCTATCTGGAGCATCCTTACTGATACTAGCAAATAAACAGGACATAAAAGGTGCCCTTACACCTGAAGAAATAGCTAAGGTGCTGAACTTAGAAGCCATGGATAAATCTCGGCATTGGCAGATAGTTGGGTGTAGCGCATACACTGGTGAGGGTCTGCTTGAGGGATTCGATTGGTTGGTCCAGGACATAGCCTCTAGAATTTACATGCTTGATTGA 558 0.4373 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYSLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKFELDNLLKEERLSGASLLILANKQDIKGALTPEEIAKVLNLEAMDKSRHWQIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01341 185 SMART rab_sub_5 17 180 - -
Cca06g01341 185 ProSiteProfiles small GTPase Arf family profile. 10 177 - -
Cca06g01341 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 1 185 IPR044612 GO:0003924
Cca06g01341 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 1 185 - -
Cca06g01341 185 TIGRFAM small_GTP: small GTP-binding protein domain 15 150 IPR005225 GO:0005525
Cca06g01341 185 Gene3D - 5 182 IPR027417 -
Cca06g01341 185 PRINTS GTP-binding SAR1 protein signature 18 41 IPR006689 GO:0003924|GO:0005525
Cca06g01341 185 PRINTS GTP-binding SAR1 protein signature 46 70 IPR006689 GO:0003924|GO:0005525
Cca06g01341 185 PRINTS GTP-binding SAR1 protein signature 73 98 IPR006689 GO:0003924|GO:0005525
Cca06g01341 185 PRINTS GTP-binding SAR1 protein signature 151 175 IPR006689 GO:0003924|GO:0005525
Cca06g01341 185 SMART arf_sub_2 1 181 - -
Cca06g01341 185 Pfam ADP-ribosylation factor family 4 177 IPR006689 GO:0003924|GO:0005525
Cca06g01341 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 179 IPR027417 -
Cca06g01341 185 CDD Arl2 3 176 IPR045873 GO:0003924
Cca06g01341 185 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01341 Cca-Chr6 28273611 28275498 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01341 K07943 - gmx:100805880 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01341 06 28273611 28275498 Cca06g01341 06 28273611 28275498 ECH