Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01340 ATGGAGGGCGACGCCATTGCCATGGACTCAACGGAGTTAAAGGTCACGGAGCTATTGAAAGAGGTCCACGTAGACTACTCTCCTCACTTCTGCAAGCACGTCGATGACACCGTCTCCGCCATTAAGACATCCATCGACAAAATCCCCAACGACTTCAAGGTAACTGCGGATTTAGCATCGCGTTTCGTCACGGACATTGGCGCCGATAAGGTCGAATTCAAGTTTAAGAAGCCAGCGTTTGTTAAGATTGGTGGAAGTTACTCCATACAGAGTCTTGCGAAGCCTGAAGTCAATGTCGATCTTATTATCAGGTTACCGAAGGAATGCTTCCATGAGAAGGATTATTTAAATTACAGATACCATGCCAAGAGGTGTCTCTATCTGTGCTTGATGAAAAAGTATTTGGAGAAGTCTAAATCTATTGGTATGGTTGAATGGTCCACTCTGCAGAATGAAGCCAGAAAACCCTTGCTCATTGTTCATCCAGCTGAAAAGCTTGTTGAAGCTCCTGGTTTTTTCGTAAGGATTATTCCGTCGGCTAAGGCTATATTTAACACAGCGAAGTTGAACATGAAGCGCAACAACATTCATAATTTGAGTAATGGGACTGCTCTTCAGGCTACGCCGAAGTACAATTCTAGTATTCTGGAAGACATGTTTATAGAGGATTTGGAATTCATCAACAAATATTTTATTGGATGGAAGGAAATAAGAGAGGCTTTAATCCTGCTTAAGGTTTGGGCTCGGCAAAGAAGTTCGATATACGTTCACGATTGCCTGAATGGGTTTTTGATTTCTGTCGTACTAGCTTATCTTGCTTCTAAGCAACATATCAGCAATTCAATGAAGGCAACTGAAATAATTCGTATCACCTTGAACTTCATTGCCACCTCAGAGTCGTGGAGCCGAGGACTCTACTTTCCAAAGGAAGGCCAGATCAACATTACAAAAGAGCAAAAGATGCAACTTAAAGAGTCATTTCCAGTTGTCATATGTCATCCATCTGGAGGATGCAATTTGGCTTTTCGAATGTCTAGGATTGGTTTTACTCGGCTTCGAGGTGAGGCTGCTTTGACTCTTAGGTGCATGGAAAAGTGTAGAGATGGTGGATTTGAGGAAGTTTTTATGACCAAGATTGACTATGCTGTTAAATATGACTATTGTATGAGAATAAATTTGAAGGGAAAGAAGGAGGTATTTTCATCAGGATTTTGTTTGGATGATGAGTGCTGGAGATCATATGAGGATAAAGTACATAGTATTTTATCTAAAGGGTTGAATGATAGAGCAAATTCCATTCAAGTTACATGGAGAAATACACAATGCCAGTGGAGTGTGCACGATGGGTTGTCGGTACTTGATAAAGAGCCACTGTTCATAGGAATTTCAGTGAGTACTTTGGAGAAAGCATTTAGGATGGTTGATATTGGCCCAAATGCTGAAAGTAAAGAAGAGGCTCTTGAATTCCGGAAGTTTTGGGGAGAAAAAGCAGAGCTTAGAAGATTTAAAGATGGTAGAATTGCAGAAAGCACAGTGTGGGAAAGTGAGCAATGGGCAAGGCATCTTGTTTTAAAAAGAATAGCTGAGCATGTACTTAGTCGGCATCTTTCTCTATCCAAGGAAAATATTGTAGTTGTCGTGGATCAACTTGATTTCTCTTTGCTTCATGGTGCTGGAGATCCTATATCATACTCTGGAAGTTTGCTTGGGTCATTTGATGTTTTATCGAAGCGTTTGCGTCTTATTGAAGATCTCCCTTTGAAGGTGTCCAGTGTACAGCCTTTAGACTCTGCTTTCAGGTTTACATCAGTCTTCCCTCCTGAGCCTCATCTTCTAGCTAATGAAAAAGTTGAGTCTCTCAGAATGAATAAGGTAGTTCCATCCTGCATTCAACCACTGGAAGTTATGATTCAGCTAGAAGGTTCCGGGAACTGGCCAATGGATGAAATTGCAATTGAGAAAACAAAATCTAGTTTCCTTATTCAAATTGCAGTGAGTCTTCAAAAGACGTGGGGAATGACATGTGCTGCCACCGAGGATAATGTGGATGTCTTAATGTCTGGATATGCATTTCGTCTAAAAATTTTGCATGAGAAGGGCCTTAATTTGCTCCAAAAGGAAAGTGGGAATGATCAAGCTAAGCGGGTTCCATCTATTGACAAGAAACTTTTTATCCATAGTCAGCATGCTAACATGATCAATGGATTACAAAGTCGTTATCCAATATTTGGACCAGTAGTTAGACTTGCAAAACGATGGGCTGCTTCACATCTATTTTCAGCTTGCTTGGCAGAGGAGGCTGTTGAGCTATTGGTTGCTCATCTTTTTCTTAATCCTTTGCCATTTGATGTTCCCTGCTCACGGATCACTGGGTTTTTAAGGTTCCTGCGGCTACTCTCACACTATGACTGGACGTTCTCTCCACTGGTTGTTGACATAAATAATGACTTGAGCCAAAGTGATGAGAAAGAAATAAATGACAACTTTTTACTAAGAAGAAAAGGTGAAGGAGAGAATGGACAAAGTGTAGGACCAGTGATGTTCTTAGCTACAGTTTATGACAAAGAATCCGAGGCTTGGACTGGATTATCCCCTAGTGGAATGGAACTTAAAAGGTTAGTTGCATATGCCCGAAGCAGTGCCAATTTGCTGACAAAACTCACATTTCAGGAAGAGATTGGTCCATATAGATGGGAGTGTCTTTTTAGAACTCCTTTAAACAATTACGATGCAGTCATTATTCTCCACAAGGAAAAACTCCTGTATCCCCAAAGGCTTCTCTTCACATCAGAAGTTGATCATGGAACACGTGTTGCAGAAGGACAAGCCAGCAAGTGTTTCCAACCCTTTTTGTTGCCTAAAGATTTGAAGGGCAGGCCAGAGGAACTTAAAACTAAGTTGCTGGTAGATTTTGATCCATCAAAGTGCTTTATCAGACATTTAAAGCAAGAGTTCTCAACCACATTCCAAGTATGGCATGATTATCTGGGAGGTGATGTTATTGGCCTTACATGGGGGGAACTACCTTCTTCCAAGAAGCGGAAGCTCGAGGAAGTAGTTGAGGAGGAAGAATACAACCCTTCCAAGGTGTTAAAAGCGGTGGGGGAACTTGGGAAAGGGTTTGTGAGGAGTATATACTTTCTCAAGCCCCCAAGGGCCAAGGCTCATGAATTAATATAG 3180 0.4138 MEGDAIAMDSTELKVTELLKEVHVDYSPHFCKHVDDTVSAIKTSIDKIPNDFKVTADLASRFVTDIGADKVEFKFKKPAFVKIGGSYSIQSLAKPEVNVDLIIRLPKECFHEKDYLNYRYHAKRCLYLCLMKKYLEKSKSIGMVEWSTLQNEARKPLLIVHPAEKLVEAPGFFVRIIPSAKAIFNTAKLNMKRNNIHNLSNGTALQATPKYNSSILEDMFIEDLEFINKYFIGWKEIREALILLKVWARQRSSIYVHDCLNGFLISVVLAYLASKQHISNSMKATEIIRITLNFIATSESWSRGLYFPKEGQINITKEQKMQLKESFPVVICHPSGGCNLAFRMSRIGFTRLRGEAALTLRCMEKCRDGGFEEVFMTKIDYAVKYDYCMRINLKGKKEVFSSGFCLDDECWRSYEDKVHSILSKGLNDRANSIQVTWRNTQCQWSVHDGLSVLDKEPLFIGISVSTLEKAFRMVDIGPNAESKEEALEFRKFWGEKAELRRFKDGRIAESTVWESEQWARHLVLKRIAEHVLSRHLSLSKENIVVVVDQLDFSLLHGAGDPISYSGSLLGSFDVLSKRLRLIEDLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKVESLRMNKVVPSCIQPLEVMIQLEGSGNWPMDEIAIEKTKSSFLIQIAVSLQKTWGMTCAATEDNVDVLMSGYAFRLKILHEKGLNLLQKESGNDQAKRVPSIDKKLFIHSQHANMINGLQSRYPIFGPVVRLAKRWAASHLFSACLAEEAVELLVAHLFLNPLPFDVPCSRITGFLRFLRLLSHYDWTFSPLVVDINNDLSQSDEKEINDNFLLRRKGEGENGQSVGPVMFLATVYDKESEAWTGLSPSGMELKRLVAYARSSANLLTKLTFQEEIGPYRWECLFRTPLNNYDAVIILHKEKLLYPQRLLFTSEVDHGTRVAEGQASKCFQPFLLPKDLKGRPEELKTKLLVDFDPSKCFIRHLKQEFSTTFQVWHDYLGGDVIGLTWGELPSSKKRKLEEVVEEEEYNPSKVLKAVGELGKGFVRSIYFLKPPRAKAHELI 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01340 1059 Pfam Nrap protein domain 1 99 224 IPR035082 -
Cca06g01340 1059 Pfam Nrap protein domain 3 382 537 IPR035368 -
Cca06g01340 1059 Pfam Nrap protein PAP/OAS1-like domain 5 740 892 IPR035370 -
Cca06g01340 1059 Pfam Nrap protein domain 6 906 1045 IPR035371 -
Cca06g01340 1059 Pfam Nrap protein PAP/OAS-like domain 237 378 IPR035367 -
Cca06g01340 1059 Pfam Nrap protein nucleotidyltransferase domain 4 565 737 IPR035369 -
Cca06g01340 1059 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 8 1047 IPR005554 -
Cca06g01340 1059 Gene3D - 195 381 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01340 K14544 - gmx:100776157 1904.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01340 06 28262585 28271830 Cca06g01340 06 28262585 28271830 ECH