Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01334 ATGGCCGCTTCAAGGTTAACCTCATGCGTCGCCGTAACATCCGCCGCGGTGCTTTCCATGTCCACCTTCTCCGATCGCGCCTCCGCCGACTCTTCCTTTCGATTCCCTTTCTTCAGTTCTTCACCTTCCAATGcgccgccgccgccgccgccgagccaggcctccgacggcaagtccgagcctccgccgccCGACGAACCTAACAAGTCGGGTTTCGACCCGGAATCGTTGGAAAGAGGAGCCAAAGCTCTCCGCCAAATCAATAGTTCTCCCTACGCCAAACAGGTGTTTGATTTAATGCGGAAACAAGAGGAAACTCGCCTTGCTGAAATAGATGCTGAGAAAGTTCATTACGAACTTATTCAGTCTCAAGGAGATATTGAAAGGCAGCGGAAAATGGCTGAAGAACAACGCAACCTAATACAGGAGCAAGCGCAGAGACAGGCCCAGGTGATGCGATATGAAGATGAATTGGCAAGGAAAAGAATGCAGACAGATCATGAAGCCCAAAGGCGACATAATGTTGAATTGGTCAAGATGCAAGAGCAGTCTTCTGTAAGAAAGGAGCAGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAAACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCAGAGGCTGAAGGCCGAGCCCATGAAGCAAAATTGACTGAGGATCATAACAGGAGAATGCTTATAGAACGAATGCAAGGTGAAAGGGATAAATGGCTTGCTGCAATTAATACAACTTTTAGTCATATTGAAGGTGGTGTAAGGGCCTTGTTGACAGATAGGGATAAATTGCTTATGACTGTTGGAGGAGCTACTGCACTAGCTGCAGGGGTATACACGACTAGAGAAGGTGCTAAAGTCACTTGGGGCTATATTAATCGGATTTTGGGGCAGCCATCACTGATCCGGGAATCATCCATGGCAAAATTTCCAGGGTCAAAGATTATTTCTCAAGCCAAAAATAAAGTTCTAAATAATAGTAGTTTGGCTGGGGCAGAAAAGCCTATTGGGAGTAGAAATGGTCTTGGAAATGTAATCCTACATCCATCATTGAAGAGAAGAATAGAGCATCTTGCACGTGCAACATCAAATACCAAATCCCATCAGGCACCATTTCGTAACATGCTCTTTTATGGGCCTCCTGGCACCGGTAAAACGATGGTTGCAAGGGAAATAGCTAGAAGATCGGGTTTGGATTATGCCATGATGACCGGAGGAGATGTTGCACCTCTGGGCGCACAGGCTGTTACCAAAATTCATGAGATATTTGATTGGGCCAAGAAATCTAGAAAAGGCCTACTACTTTTTATAGACGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCACACATGAGTGAAGCTCAACGAAGTGCTCTAAATGCATTGCTCTTCAGAACCGGTGATCAGTCTAGAGACATAGTACTTGTCCTTGCGACAAACAGACCAGGTGATCTCGATAGTGCAGTTATTGATCGTATTGATGAAGTGATTGAATTCCCGCTTCCAGGAGAAGAGGAACGTCTAAAGTTATTGAAGCTCTATTTAAACAAGTACCTTCGCGATGACAACGATGGCTCCAAAGGGGGCTTCTTGCTGAAGAAGCAGCCCCAGAGAATTACCATAAAAGATTTACCCGAAGATGTTTTCAGAGAGGCTGCCAGGAAAACAGAGGGATTTTCTGGCCGAGAGATCGCCAAACTCATGGCTAGCGTCCAAGCTGCTGTCTATGGGCGTCCAGACTGCATCTTGGATTCCCAGTTGTTTAAAGAAATTGTAGATTACAAGGTGGTGGAACATCATCAACGATTAAAACTCGCAGCTGAAGGTGGCCAGCCTGGCCAAGTATAA 1899 0.4397 MAASRLTSCVAVTSAAVLSMSTFSDRASADSSFRFPFFSSSPSNAPPPPPPSQASDGKSEPPPPDEPNKSGFDPESLERGAKALRQINSSPYAKQVFDLMRKQEETRLAEIDAEKVHYELIQSQGDIERQRKMAEEQRNLIQEQAQRQAQVMRYEDELARKRMQTDHEAQRRHNVELVKMQEQSSVRKEQARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERMQGERDKWLAAINTTFSHIEGGVRALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKNKVLNNSSLAGAEKPIGSRNGLGNVILHPSLKRRIEHLARATSNTKSHQAPFRNMLFYGPPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVIDRIDEVIEFPLPGEEERLKLLKLYLNKYLRDDNDGSKGGFLLKKQPQRITIKDLPEDVFREAARKTEGFSGREIAKLMASVQAAVYGRPDCILDSQLFKEIVDYKVVEHHQRLKLAAEGGQPGQV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01334 632 PANTHER PUTATIVE ATP-ASE 1 628 IPR039188 GO:0005739|GO:0007005
Cca06g01334 632 MobiDBLite consensus disorder prediction 34 78 - -
Cca06g01334 632 Gene3D - 335 538 IPR027417 -
Cca06g01334 632 Coils Coil 185 219 - -
Cca06g01334 632 SMART AAA_5 387 520 IPR003593 -
Cca06g01334 632 Coils Coil 127 147 - -
Cca06g01334 632 MobiDBLite consensus disorder prediction 163 194 - -
Cca06g01334 632 Pfam ATPase family associated with various cellular activities (AAA) 391 518 IPR003959 GO:0005524|GO:0016887
Cca06g01334 632 ProSitePatterns AAA-protein family signature. 490 509 IPR003960 GO:0005524|GO:0016887
Cca06g01334 632 Pfam ATPase family AAA domain-containing protein 3, N-terminal 58 319 IPR021911 -
Cca06g01334 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 614 IPR027417 -
Cca06g01334 632 MobiDBLite consensus disorder prediction 163 212 - -
Cca06g01334 632 CDD AAA 385 518 - -
Cca06g01334 632 MobiDBLite consensus disorder prediction 41 69 - -
Cca06g01334 632 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01334 Cca-Chr6 28210189 28216118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01334 367 594 Miscellaneous Gene Families AT5G53170 28.870 3.16e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01334 K17681 - gmx:100777755 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01334 06 28210189 28216118 Cca06g01334 06 28210189 28216118 ECH