Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01327 ATGGACTTCCGCAGTCACACATCTTTGTTAATAATTCTTTTTGGTTTTCTTGGCTTATTCTCCTTTACAGTTGAAGCAGCCACAAAGAAATATCAATTTGATATTCAAGTAAAGAATGTGAGTAGACTATGTCATGCAAAACCCATTGTAACAGTAAACGGGAGGTTCCCAGGGCCAACGATTTATGTAAGAGAGGGAGATAGAGTACTAGTCAACGTAACCAACCATGCAAAATATAACATGTCAATTCATTGGCATGGAATTAAACAATATCGTAATGGTTGGGCGGATGGACCAGCTTACATTACACAATGTCCAATTCAGACCAGAAGCAGCTACACTTATGACTTCAACGTCACAGGACAAAGAGGAACTTTATGGTGGCATGCTCACATTTTTTGGCTGAGGGCCACTGTTTATGGTGCAATTGTTATCTTGCCTAAGCCTGGGACCCCATTTCCTTTCCCACAGCCAGCCAGAGAATTTGAAATTCTGCTTGGAGAATGGTGGAACAATGACGTGGAAGTGGTTGAAACGCAAGGGAACCAAATGGGGTTGCCACCAAATATGTCAGATGCACATACAATCAATGGGAAGCCAGGACCACTCTTTCCTTGCTCAGAGAAACATACATTTGCAATGGAGGTAGAACAAGGGAAGACTTACCTTCTGAGAATCATCAACGCTGCCCTCAATGACGAGCTTTTCTTTGCCATTGCGGGTCACAATTTGACAGTAGTGGAGGTTGATGCTGTTTATACAAAACCATTCACCACTCAAGCCATTCTAATTGCACCTGGTCAAACCACAAATGTTCTAGTCAAGGCGAACCAAGTAGCAGGAAGATACTTCATGGCTACAAGGACCTTTATGGACGCACCAATCCCAGTTGACAACAAATCCGCTACAGCTATATTCCAATACAAAGGCATTCCAAACACTGTCTTACCCTCTCTTCCTTCTCTTCCTGCTCCCAATGACACACGTTTTGCATTGAGTTACAACAAGAAACTAAGGAGCCTAAACTCCGTTCAGTACCCCGCTAATCTCCCACTCAAAGTGGACCGAAACCTCTTTTACACCATCGGTTTGGCCAAGAATTCTTGCCCTACATGCATCAACGGAACGCGGTTTCTTGCTTCCTTAAACAATGTCTCATTTGTGATGCCGCAAACCGCGCTTCTCCAAGCTCACTACTTCAATATCAAGGGGGTTTACAGAACTGATTTTCCTGACAAGCCTTTAACTTCCTTTAACTATACAGGTGCACCATTAACGGCTAACCTTGGTACTTCAACGGGCACAAGAATTAGCAAGGTTCCCTTTAATTCTACGGTGGAGCTGGTTTTGCAAGACACTAATCTCCTCACTGTTGAGTCGCACCCTTTTCATCTTCATGGCTATAACTTCTTTGTTGTTGGAACTGGGATTGGTAATTTTGATCCTGCAAAAGACCCTGCTAAATACAACTTGGTAGATCCTATTGAGAGGAACACTGTTGGGGTTCCCACCGGTGGTTGGACCGCAATTCGGTTCAGGGCTGATAATCCAGGTGTGTGGTTCATGCATTGTCATTTGGAGCTGCACACAGGGTGGGGGTTGAAAACGGCGTTCCTTGTGGAAGATGGACCAGGAGAAGATCAATCTGTTGTGCCTCCACCGAAGGACCTTCCAGCATGCTAG 1683 0.4439 MDFRSHTSLLIILFGFLGLFSFTVEAATKKYQFDIQVKNVSRLCHAKPIVTVNGRFPGPTIYVREGDRVLVNVTNHAKYNMSIHWHGIKQYRNGWADGPAYITQCPIQTRSSYTYDFNVTGQRGTLWWHAHIFWLRATVYGAIVILPKPGTPFPFPQPAREFEILLGEWWNNDVEVVETQGNQMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVEQGKTYLLRIINAALNDELFFAIAGHNLTVVEVDAVYTKPFTTQAILIAPGQTTNVLVKANQVAGRYFMATRTFMDAPIPVDNKSATAIFQYKGIPNTVLPSLPSLPAPNDTRFALSYNKKLRSLNSVQYPANLPLKVDRNLFYTIGLAKNSCPTCINGTRFLASLNNVSFVMPQTALLQAHYFNIKGVYRTDFPDKPLTSFNYTGAPLTANLGTSTGTRISKVPFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPAKDPAKYNLVDPIERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFLVEDGPGEDQSVVPPPKDLPAC 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01327 560 Pfam Multicopper oxidase 164 310 IPR001117 -
Cca06g01327 560 CDD CuRO_3_LCC_plant 405 543 IPR034289 GO:0005507
Cca06g01327 560 Pfam Multicopper oxidase 35 148 IPR011707 GO:0005507
Cca06g01327 560 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Cca06g01327 560 SUPERFAMILY Cupredoxins 351 560 IPR008972 -
Cca06g01327 560 Gene3D - 366 560 IPR008972 -
Cca06g01327 560 TIGRFAM laccase: laccase 26 560 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cca06g01327 560 Pfam Multicopper oxidase 416 542 IPR011706 GO:0005507|GO:0016491
Cca06g01327 560 Gene3D - 159 344 IPR008972 -
Cca06g01327 560 PANTHER LACCASE 9 560 - -
Cca06g01327 560 CDD CuRO_2_LCC_plant 164 308 IPR034285 -
Cca06g01327 560 SUPERFAMILY Cupredoxins 20 172 IPR008972 -
Cca06g01327 560 ProSitePatterns Multicopper oxidases signature 1. 518 538 IPR033138 -
Cca06g01327 560 Gene3D - 20 147 IPR008972 -
Cca06g01327 560 PANTHER MULTI-COPPER OXIDASE 9 560 IPR045087 -
Cca06g01327 560 SUPERFAMILY Cupredoxins 155 337 IPR008972 -
Cca06g01327 560 ProSitePatterns Multicopper oxidases signature 2. 523 534 IPR002355 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01327 Cca-Chr6 28147480 28150484 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01327 K05909 - gmx:100820452 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01327 06 28147480 28150484 Cca06g01327 06 28147480 28150484 ECH