Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01316 atgggaaccttgggcagagcattctacgccgtcggattttggatccgcgagaccggccaagccatggatcgcctcggttctcgcctccaaggcaactacctcttccaagaacagcTGTCCAGGCATCGACCTCTGATGAATCTCTTTGACAAAGGTCCCTCCGTCCATAGGGATGCATTTGTGGCCCCCAGTGCCTCCCTCCTCGGCGACGTTCACGTTGGCTCAGCCTCATCCATTTGGTATGGATGTGTTCTCAGAGGTGATGCTAACAGCATTGTTATTGGATCTGGAACTAATATACAAGACAATTCTCTTGTTCATGTTGCCAAGTCTAACTTGAGTGGAAAAGTATTACCAACTATCATTGGAGATAATGTCACTGTAGGTCATAGTGCTGTGTTACAAGGATGTACTGTTGAGGATGAGGCATTTATTGGCATGGGTGCAACCTTGCTTGATGGTGTATATGTTGAGAAACATGCCATGGTTGCTGCTGGAGCTCTTGTCAGGCAGAATACAAGGGTCCCCTATGGAGAGGTTTGGGGAGGTAATCCAGCAAGATTCTTGAGGAAGCTCACAGAAGATGAAATGACCTTCTTCTCACAATCTGCCTTAAATTATTCCAATTTGGCTCAAGCTCATGCTGCGGAAAATGCAAAAAAACTTGATGAGACTGAATTCGTGAAAGTTCTTAAGAAGAAATCTGCTCGTCATGGTGAGGAATATGCAGTGCTAGGTAGTGTTAAAGAAACACCTGCAGAGCTTAACCTTCCAGATAATGTTTTGCTAGACAAAGCTCCCAAGGCTTAG 810 0.3802 MGTLGRAFYAVGFWIRETGQAMDRLGSRLQGNYLFQEQLSRHRPLMNLFDKGPSVHRDAFVAPSASLLGDVHVGSASSIWYGCVLRGDANSIVIGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLQGCTVEDEAFIGMGATLLDGVYVEKHAMVAAGALVRQNTRVPYGEVWGGNPARFLRKLTEDEMTFFSQSALNYSNLAQAHAAENAKKLDETEFVKVLKKKSARHGEEYAVLGSVKETPAELNLPDNVLLDKAPKA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01316 269 Pfam Hexapeptide repeat of succinyl-transferase 119 151 IPR001451 -
Cca06g01316 269 Gene3D Hexapeptide repeat proteins 45 223 - -
Cca06g01316 269 PANTHER DYNACTIN SUBUNIT P25 1 269 - -
Cca06g01316 269 PANTHER YRDA, PUTATIVE-RELATED 1 269 - -
Cca06g01316 269 CDD LbH_gamma_CA_like 54 212 - -
Cca06g01316 269 SUPERFAMILY Trimeric LpxA-like enzymes 45 212 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01316 Cca-Chr6 27995785 27998952 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01316 K01726 - gmx:100794184 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01316 06 27995785 27998952 Cca06g01316 06 27995785 27998952 ECH