Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01311 ATGGGATCCAACACCAACAAGTACAACATCTTTTCCTCTTTCACTTCGGCCTCATCATGGTTCGAGCTCTACGCAGCCTTCTCCACATTCACGATGCTCCTCAAAGCAGCATTCAATGATCTCATACCCCACCAACTTCGATCCTTCGTCACCTCAAAGCTAGAGTCTTTGTTCTCCAAATACCAACCCAACAACCGAGTCTCTCTCAAAATAAACCAATTTTGGGACGAAAGTTTGAGAAGCCGGAATGAGCTTTTCTACGCTGCCCACGAGTACCTCCCCACCAAGATCACCAACACCTTCAAGTCGCTCAAAGTTGGGAAAATAGAAGACCAAAAACACCTCGAGCTCGCAGTGGATGCAACTCAAGAGGTGCTGGACGAATTTGAAGGCATCAAGTTTACTTGGAAGCTCGATGACGGCTCCGAGAAGGACTCTGAGAATTTCAAAAAGTACAGCTTTGAACTAACCTTCAACGGGAAGCATAGAGAAAGAGCTTTGGAACGGTATATCCCGCACGTGCTTAAAACATACGAGGCCATGAAATCTGACAAGAGGATTCTCAAAATCTATTCCAGGTTGGATGGGTATTGGACCGAAAGTGAGTTATCACATCCTGCCACATTTGACTCCCTCGCCTTGAGTCCTGAGTTGAAGAAGGATATAATCGACGACTTAGATCGGTTCCTGAGGAGAAAGGAACTTTATAAGAAAGTGGGGAAGCCTTGGAAACGTGGCTACCTCTTGTATGGAACCCCCGGAACTGGAAAATCTAGCCTCATTGCTGCTATTGCCAATTACTTGAAATTCGATGTGTATGATTTGGAGCTTACTTCTGTTGACTGTAACTCGGAGCTCATGCGGTCCATGAAGGAAGCATCTAACCGTTCCATCATTGTGGTTGAAGATGTAGATTGCAACAAAGTGGTGCATGCAAGATCTAAAGCAAATGGTCTTGAAGATCAAGATTCAGACTCCGACAATGAGGGTGTCACTGCCAAGGTTAAGGCAAACAGGTTTACTCTTTCGGGTCTGCTTAACTACATGGATGGATTGTGGTCAAGTGGTGGAGAGGAGCGAATTGTCATCTTCACTACTAATCACAGAGAAAAAATTGACCCTGCGTTGTTGCGCCCTGGTCGAATGGACATGCATATTCACTTGTCCTTTCTCAAAGGTAAGGCGTTTCGAGTCTTGGCTTCCAATTATTTGGGAATTGAAGGAGATCATCCTCTCTTTGAAGAAATTGAGGGTCTGTTGGAGAGAATTGAAGTCAGCCCTGCAGTAGTAGCAGAGCAACTTATGAGAAATGAGGATCTTGATGTTGCCTTGGAAGCACTTGTTAAATTTCTCAAAGAAATGGACAAGGACAGAAATTGCAATGGAGAGTTAACAGGGTTGCTTTCATAG 1410 0.4468 MGSNTNKYNIFSSFTSASSWFELYAAFSTFTMLLKAAFNDLIPHQLRSFVTSKLESLFSKYQPNNRVSLKINQFWDESLRSRNELFYAAHEYLPTKITNTFKSLKVGKIEDQKHLELAVDATQEVLDEFEGIKFTWKLDDGSEKDSENFKKYSFELTFNGKHRERALERYIPHVLKTYEAMKSDKRILKIYSRLDGYWTESELSHPATFDSLALSPELKKDIIDDLDRFLRRKELYKKVGKPWKRGYLLYGTPGTGKSSLIAAIANYLKFDVYDLELTSVDCNSELMRSMKEASNRSIIVVEDVDCNKVVHARSKANGLEDQDSDSDNEGVTAKVKANRFTLSGLLNYMDGLWSSGGEERIVIFTTNHREKIDPALLRPGRMDMHIHLSFLKGKAFRVLASNYLGIEGDHPLFEEIEGLLERIEVSPAVVAEQLMRNEDLDVALEALVKFLKEMDKDRNCNGELTGLLS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01311 469 CDD AAA 232 389 - -
Cca06g01311 469 PANTHER BCS1 AAA-TYPE ATPASE 13 460 - -
Cca06g01311 469 Gene3D - 199 386 IPR027417 -
Cca06g01311 469 Pfam Domain associated at C-terminal with AAA 42 138 IPR025753 -
Cca06g01311 469 SMART AAA_5 243 392 IPR003593 -
Cca06g01311 469 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 13 460 - -
Cca06g01311 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 442 IPR027417 -
Cca06g01311 469 Gene3D - 387 454 - -
Cca06g01311 469 Pfam ATPase family associated with various cellular activities (AAA) 248 388 IPR003959 GO:0005524|GO:0016887
Cca06g01311 469 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01311 Cca-Chr6 27898134 27900102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01311 208 388 Miscellaneous Gene Families AT3G47060 29.293 2.83e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01311 - K08900 gmx:100789094 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01311 06 27898134 27900102 Cca06g01311 06 27898134 27900102 ECH