Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01293 ATGGGGTCTGTGCGTTACCCTCTATTTGCGATGATCTTAACTTGGGGGTTACTGTTATTGGGCTCAGAATCAAAGACACATTCAGGAGATGTACAAGTTCTGAAGGAGCTGAAGCAAGGTTTGGAGCCAGGTTCGGTGAACCCAGGCTCGTGCGTTAGTTCCTGGGACTTCACGTTGGACCCGTGCGACAACCTTTTAAGCGAGAAATTCACGTGCGGGTTCAGATGCGACGTCGTCGTTTCAGGGCTGAGCCGAGTCACGGAACTGGCGCTAGACCAAGCCGGTTACGCGGGTTCCCTCAACAACCTCACGTGGAACCTTCCTTATCTTCAAACACTGGATATCTCCCACAACTACTTCTCCGGCCAAATTCCCGATTCCTTCTCAAACCTAACTCGCCTGAGCCGACTCAGCCTGTCGTCCAACTCCTTCTCCGGCGAGATCCCCGCTTCCCTCGGCACACTCTCCAACCTGGAAAAGCTTTACCTCGACAACAACAACCTACGAGGAACAATCCCACAAGGCTTCGCCAACCTTAAAACACTCGAACTCCAATCCAACAACCTCAACACCCGCCTTTCAAACCTGGCCTCCCTCGGAACCCTCGAATACCTCGATCTCAGCGACAACGCCGTCAGCGGAGAGTTTCCCCCGTCGCTCCCTTTTTCGTTGGTTCAGATTTCAATCAGGAACAATAACTTGAGCGGGGTTTTAACCCGCAAAAGCTTCGAGAAGTTGACGAGGTTGCAGGTGGTGGATTTAAGCTCCAACAGAATGAGTGGCTCCGTTCCCTCCCTATTGTTTGAGCTTCCGTCGTTGCAGCAGTTGACGCTGTCGTTCAACGAGTTCACCAACGTGGAAGCGCCGTATAAGGGAGTGGAGTCGAGGAGCGGGCTGGTGGCGGTTGATCTGAGCAACAACAGGCTCCGGGGGTGGTTGCCGTCGTTCATGGCGGCAATGCCGAGGCTTTCGTCGCTGTCGTTGGAGAATAATGAGTTGACGGGGCGAATCCCAACGGGGTTGGGAGTGAAAACGGTGTTTCCCGGAAAGGGGGTGGCGGCGTTGGAGAGGCTTCTGTTGGGGGGGAATTACTTGGTGGGGGGGATTCCTCGGCCATTGTTGGCGCTGAAACGCGATTCTGCGAACGTGAGTTTGGGTGATAACTGCTTGTATAGGTGTCCTCGTAGTTTCTTTTTCTGTCAGGGTCCACAACAGAAGTCATTGGTTCTCTGTAACAGATTTACCCCTCCCTCGTCACCTTAA 1263 0.5344 MGSVRYPLFAMILTWGLLLLGSESKTHSGDVQVLKELKQGLEPGSVNPGSCVSSWDFTLDPCDNLLSEKFTCGFRCDVVVSGLSRVTELALDQAGYAGSLNNLTWNLPYLQTLDISHNYFSGQIPDSFSNLTRLSRLSLSSNSFSGEIPASLGTLSNLEKLYLDNNNLRGTIPQGFANLKTLELQSNNLNTRLSNLASLGTLEYLDLSDNAVSGEFPPSLPFSLVQISIRNNNLSGVLTRKSFEKLTRLQVVDLSSNRMSGSVPSLLFELPSLQQLTLSFNEFTNVEAPYKGVESRSGLVAVDLSNNRLRGWLPSFMAAMPRLSSLSLENNELTGRIPTGLGVKTVFPGKGVAALERLLLGGNYLVGGIPRPLLALKRDSANVSLGDNCLYRCPRSFFFCQGPQQKSLVLCNRFTPPSSP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01293 420 Gene3D Ribonuclease Inhibitor 292 415 IPR032675 -
Cca06g01293 420 Pfam Leucine rich repeat 108 168 IPR001611 GO:0005515
Cca06g01293 420 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Cca06g01293 420 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 417 - -
Cca06g01293 420 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 417 - -
Cca06g01293 420 Gene3D Ribonuclease Inhibitor 194 291 IPR032675 -
Cca06g01293 420 Gene3D Ribonuclease Inhibitor 29 193 IPR032675 -
Cca06g01293 420 Pfam Leucine Rich repeat 201 215 IPR001611 GO:0005515
Cca06g01293 420 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Cca06g01293 420 SMART LRR_typ_2 320 344 IPR003591 -
Cca06g01293 420 SMART LRR_typ_2 270 291 IPR003591 -
Cca06g01293 420 SMART LRR_typ_2 199 223 IPR003591 -
Cca06g01293 420 SMART LRR_typ_2 107 130 IPR003591 -
Cca06g01293 420 SMART LRR_typ_2 246 269 IPR003591 -
Cca06g01293 420 SMART LRR_typ_2 155 178 IPR003591 -
Cca06g01293 420 SUPERFAMILY L domain-like 75 412 - -
Cca06g01293 420 Coils Coil 179 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01293 Cca-Chr6 27666339 27668135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01293 74 399 Receptor kinase-like Gene Family AT3G28890 33.837 2.61e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01293 - - gmx:100811366 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01293 06 27666339 27668135 Cca06g01293 06 27666339 27668135 ECH