Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01274 ATGGACCGTCGGGGTTGGCTCTGGAAGAAAAAATCATCTGATAAAAACATAAAGAATGAGAATGAGAAACCAGTGTCTACATTTGAATCTGTTGGTTCTACCTTGTCTTCTGTGGCACATGTAGGAGATCAGCAAGACAACAGCAACAGTAAGAACTATGTTCAAATATCAATGGAATCATACACGCGTATGTCTGGATTGGAAGATCAAGCTGCAAATTTGGAGGATCAAGTAAAAGCTTTGGAAGCAAAGCTATCTGCAGTTTATTCAGAATTAAATAACAAGGATACTTTAGTTAAACAGCATGCAAAAGTTGCAGAGGAAGCAGTCTCAGGTTGGGAGAAAGCTGATGCAGAAGTTGTTTCCCTAAAACGTCAACTTGAATCTTTTTCTCTCTCTAAACTTACTGCTGATGAGAAAGCGGCTCACCTAGATGGAGCTCTAAAAGAGTGCATGAAGCAGATAAGAACTGTAAAGGAAGAAAGTGAGCGGAAACTGCAGGAGGTGATTCATATGAAATCCAATCAGTGGGAGAAAATCAAGTTAGAACTTGAAGCACAAATAGACAATTTGGATGAAGGACTTCGTGAGGTAGCTGGTGAAAATGATGCCCTTCTAAGATCACTTCAAGAAAGTTCCAACAACATAGTGAAACTGAAAGAAGAAAAGTCTGAAGCTGAGGCAGAGGTAGAGCTTCTAAAGAAGAGTATTCAGTCAAAAGAAAAAGAAATAACTTCACTGAAGTATGAGCTGCACATGATTTCCAAGGAGCTGGATATCCGAAATGAAGAGAAGAATATGATTATGAGATCAGCAGAAGTGGCGAACAAACAACACGCAGAAGATGTCAAGAACATTGCCAAGCTAGAGAGTGAGTGCCAACGACTGCGTGGTCTGTTGAGAAAGAAGTTACCTGGGCCTGCTGCATTGGCACAAATGAAGCTAGAAGTTGAGAGTTCACATCATGTCATCAGTGCATCCCATCTAAGAAAAACTTGTTCAAAAACTGATAGCATGCAAGAATCTGAGTTTCTTACCAAACAACTGGAGGTGCTGGAAGAAGAAACAAAGACATTAAAAGAAGCATTGGCCTCAAGTAATGCTGAACTGCAGGCTTCTAGAAACTTGTATGCTAAAACAGTTGGCAGATTTAAGCGCTTGGAAGCAGAGATCCATCAAGAAAGAAGCGCTCAGAAAGCAAATTTGGCAACCAATTATGGAAACTCAATCAGTAGAATTTATACCTATCCACCAAGCATCTCTTCTATGTCTGACAATGGGCATGAGGATCCAGAAAGTCCTGCTGAGTCATGTTCAACATCGATTCCTGACCATTCTAATATCAGGAGGATTGGAAGTGTAGGTAAATTTGTGAATCATAAGAGTGAAACTATCTCAGAACTTATGGATGACTTTCTGGAAGTGGAGAAGATGGCATGTTTATCAGACAATGGTGGTGTACCTCTTGGCGTCAATAGTAAAGCTAGTGATGCCAAAGATAAAAAGGAGACTAACTGTTTATCTTCAAATCAAAATTGGCGTGACAGGACGAACCAAACCATAGAACCTGAGGCTGACAGTGGTTACCTTGATAAGGCGGCTGAACATGATGAGCATCTGCAAGATCCCAAGAAAAAAGAACTGATGTTGCAGGAAAACATGCAGCTTCTAAAAGATCTGAAAGCACAATTGGCATTGTCTCATAAATCATGTAGTTTGGCTGAGATTCAGCTGAAATGTATGACCGAGTCTTACAAGTCACTTCAAACACGTGTGGAGGGGTTAGAAGCTGAAAATAGGTATTTAAAGGAAAAGATAGATGAGCTAAATAATGATCTTGCTGAGGAAAAACAAAGTCATCGTGATGCTTTGGTGAGGTATAAAGAAATTGAAGAGAAAATGCTTAGGGACAAGTGCTTGTTGTGTGCAGAAAATTCGGGGAAGGATAAAGAGCTAGCAGCTGCAGAGAAAAAGCTGGCAGAATGTCAAGAGACTCTGTCTATACTTGGTAGGCAATTGCATGCTATGTGCCCTCAGATAGGTGTAACCAAGACTCATCATAGCAAAAGGCTTCAAATGAATGAGAAGTTAGCCAAACCAACTTATGACTGGTCAAATTCTTATGGATCCTGTAACTCAAATGAAATTGATCATGCTGAGGCATGTAGCATAGTGTCTGACATTCAAGGAGTGACCGATGAGTTTTCATCACGCAACTCTGGTGCCACATCATGTCTTTCAGACACCGAAGGTAACTATTGGTTAAACTCTTAA 2274 0.4033 MDRRGWLWKKKSSDKNIKNENEKPVSTFESVGSTLSSVAHVGDQQDNSNSKNYVQISMESYTRMSGLEDQAANLEDQVKALEAKLSAVYSELNNKDTLVKQHAKVAEEAVSGWEKADAEVVSLKRQLESFSLSKLTADEKAAHLDGALKECMKQIRTVKEESERKLQEVIHMKSNQWEKIKLELEAQIDNLDEGLREVAGENDALLRSLQESSNNIVKLKEEKSEAEAEVELLKKSIQSKEKEITSLKYELHMISKELDIRNEEKNMIMRSAEVANKQHAEDVKNIAKLESECQRLRGLLRKKLPGPAALAQMKLEVESSHHVISASHLRKTCSKTDSMQESEFLTKQLEVLEEETKTLKEALASSNAELQASRNLYAKTVGRFKRLEAEIHQERSAQKANLATNYGNSISRIYTYPPSISSMSDNGHEDPESPAESCSTSIPDHSNIRRIGSVGKFVNHKSETISELMDDFLEVEKMACLSDNGGVPLGVNSKASDAKDKKETNCLSSNQNWRDRTNQTIEPEADSGYLDKAAEHDEHLQDPKKKELMLQENMQLLKDLKAQLALSHKSCSLAEIQLKCMTESYKSLQTRVEGLEAENRYLKEKIDELNNDLAEEKQSHRDALVRYKEIEEKMLRDKCLLCAENSGKDKELAAAEKKLAECQETLSILGRQLHAMCPQIGVTKTHHSKRLQMNEKLAKPTYDWSNSYGSCNSNEIDHAEACSIVSDIQGVTDEFSSRNSGATSCLSDTEGNYWLNS 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01274 757 Coils Coil 181 250 - -
Cca06g01274 757 MobiDBLite consensus disorder prediction 1 25 - -
Cca06g01274 757 Pfam Filament-like plant protein, long coiled-coil 95 525 IPR008587 -
Cca06g01274 757 Pfam Filament-like plant protein, long coiled-coil 499 679 IPR008587 -
Cca06g01274 757 MobiDBLite consensus disorder prediction 421 446 - -
Cca06g01274 757 Coils Coil 64 91 - -
Cca06g01274 757 Coils Coil 578 633 - -
Cca06g01274 757 Coils Coil 272 292 - -
Cca06g01274 757 SUPERFAMILY Tropomyosin 63 261 - -
Cca06g01274 757 Coils Coil 335 369 - -
Cca06g01274 757 Coils Coil 645 672 - -
Cca06g01274 757 Coils Coil 148 168 - -
Cca06g01274 757 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 757 - -
Cca06g01274 757 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g01274 757 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01274 Cca-Chr6 27381050 27385950 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01274 - - gmx:100809230 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01274 06 27381050 27385950 Cca06g01274 06 27381050 27385950 ECH