Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01270 ATGGTATCGTTGCTTGTGAAGATGGAGGAATATTTGTTGAAAGGGACTTTAGTTTTAGGGTTAGGTTTTGTGGGTTTTTGCCATTGCCATTGGGAAATGGGAAAGGAAAACGCTCTCAGTCCACAATTCTCCTCACTTTTGTCATCCTTCAAGGGCATGGCGGCAGATGAAGATGCTAACGTGTCCACTACAAAGTCTCAGCTTGGTCATTCACATGAAACATGGAAGCCGGAGATTGAAAGAAGCCATCTCCAAGTGGATGTATTGCAAATAGAACTTACAGAGGCAGAGGCTTGCAATCAGGGTTCAGATGTAGATGCAAAAAAGGAGTTGGAGGTTCTTTGGCGAAGAGTCAAGACTGCCTCTACAATGTTGACATACTTAAAATCAAAAGCTAGGCTCATGGCTGTTCCTCATTTAGCCCATACATCTTGTGGCATCAAACAATTAGACGGGGTAGGCTTTGTTGACAAAAATGGGGTACCAATATCAGGTTGGTCTGGCAATGTTGATCTTTCTTCATTTGATGACACAGATGAAGAATCTTGGATGGGAATTAGCCATCAGCATGGTTCCTTAGATGAACACGATACAGCTTATATAGGTGAGCTACTCGAGTCTGTACAGATGGTCGCAGATGTGATGGAAGCCCTTGTCAAAAGGGTTTTATTGGCCGAGTCAGAAACTGCAATAGAGAAGGAAAAAGTAAGTACAAGTCAGGAAGAAATTAAGAGGAAGTCAACCCAGTTAGAGAACATGTCTACGAAATTAGAAGAGATGGAGCTTTTTGCTATGAATACAAACAGTATTCTAAATGAGATGCGGCAGAGAGTTGAGGACTTGGTGGAAGAAACAAACAGACAGAGAGAGAGAGCTGCTGAAAATGAAGAGGAACTTTCAAGAGTGAAAGGAGAATTTGAGTCTCTGAAATCATATGTCAGTGGTTTAATCACAGTTAGAGAGACCTTGCTTTCCTCGGAGAAGCAGTTTCGAACTATTGAGAGGCTGTTTGAAAAGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCCGAAGTTCAGAAACTTATGGAAGAGAATGTCAGATTGAGTGCACTGCTTGACAAGAAAGAGGCTCAACTTCTAGCATTGAATGAACAATGTAAGTCCCAGCCGTTACCCCTCAAGAGACAAGCTGAACACTCCGATGATGGCACCTCTGCCATTAAACCTTCTCGCCTTAAAATCGCAGTACCCTCTGAGGATGCTGACAAAAAGAATGCGAACAGGAGGCTCAAAGATGTTGAAATTTGTGTCCCAATAGTTTATGGGACCATTGCATTCTATCTTGGTCGGAAGGCCAGCGAGTCTCAGTCACACAAGTGGACGGTGTATGTACGTGGAGCCACGAATGAAGATCTTGGGGTGGTGATTAAGCGGGTTGTGTTCCAGTTGCATCCCAGTTTTAATAACCCCACCAGAGTTGTTGAGTCACCACCGTTTGAGTTATCGGAATGCGGATGGGGTGAATTTGAAATAGCCATCACCCTCCATTTCCACACTGATGTCTGCGAAAAGCAGTTGGACTTGTATCACCATTTGAAATTATATCCAGAAGATGAATCTGGTCCCCAGTCCACAAAGAAACCTGTGGTTGTTGAATCTTTTAATGAGATTGTTTTTCCTGAACCCTCGGAGGGTTTTCTTGCACGTGTGCAGAATCATCCTGTTGTTAATGTTCCTAGGCTTCCTGCTGGCTTGAATTTACCAAGTCCTGTACCAATTGATACTATGAATGACAAGGAGAGGGGCGATACCAAAGATCATCCTCTAAGCCAATGGTTCATGAACTTCTCTGAGGCTGATGAGCTCTTAAAACTTGCAGCAGCTCGCCAGCAGGTTCAAGCTCATATTGTTAAGCTGCGAAGACAATTAAGTTTGGTGGAAGGACTACCTCAGCTGTCAAAACCGCCCTCTGGTTATGAGTGCACATGA 1989 0.4354 MVSLLVKMEEYLLKGTLVLGLGFVGFCHCHWEMGKENALSPQFSSLLSSFKGMAADEDANVSTTKSQLGHSHETWKPEIERSHLQVDVLQIELTEAEACNQGSDVDAKKELEVLWRRVKTASTMLTYLKSKARLMAVPHLAHTSCGIKQLDGVGFVDKNGVPISGWSGNVDLSSFDDTDEESWMGISHQHGSLDEHDTAYIGELLESVQMVADVMEALVKRVLLAESETAIEKEKVSTSQEEIKRKSTQLENMSTKLEEMELFAMNTNSILNEMRQRVEDLVEETNRQRERAAENEEELSRVKGEFESLKSYVSGLITVRETLLSSEKQFRTIERLFEKLVAKTTQLEGEKMQKEAEVQKLMEENVRLSALLDKKEAQLLALNEQCKSQPLPLKRQAEHSDDGTSAIKPSRLKIAVPSEDADKKNANRRLKDVEICVPIVYGTIAFYLGRKASESQSHKWTVYVRGATNEDLGVVIKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAITLHFHTDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESFNEIVFPEPSEGFLARVQNHPVVNVPRLPAGLNLPSPVPIDTMNDKERGDTKDHPLSQWFMNFSEADELLKLAAARQQVQAHIVKLRRQLSLVEGLPQLSKPPSGYECT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01270 662 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14B 408 655 - -
Cca06g01270 662 Pfam YEATS family 456 536 IPR005033 GO:0006355
Cca06g01270 662 Gene3D YEATS domain 430 582 IPR038704 -
Cca06g01270 662 ProSiteProfiles YEATS domain profile. 429 573 IPR005033 GO:0006355
Cca06g01270 662 CDD YEATS_TFIID14_like 435 566 - -
Cca06g01270 662 Coils Coil 264 302 - -
Cca06g01270 662 PANTHER YEATS DOMAIN 408 655 IPR005033 GO:0006355
Cca06g01270 662 Coils Coil 344 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01270 Cca-Chr6 27316571 27326838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01270 - - fve:101302782 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01270 06 27316571 27326838 Cca06g01270 06 27316571 27326838 ECH