Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01258 ATGGCTGCTGTAGTAACTGCTGCAGTTTCCTTTCCATCCTCCAAGTCCACCTCTCTTCCAAGCAGAACCTCAATCGCTGCCCCAGATAGAATAGTCTTCAAGAAGGTTTCGTTGCAATACAGAGATGTTTCAATCAGTGGAAGGATAGTTTCTATCAGAGCACAAGTGACCACAGAAGCACCTGCTAAGGTTGAAAAGGAATCCAAGAAACAGGAGGAAGGTGTGATTGTGAACAAGTTCAAACCCAAGAACCCTTATACTGCTAGGTGTCTTCTCAACACTAAGATCACTGGGGATGATGCACCTGGAGAAACTTGGCACATGGTCTTCAGCACTGAGGGAGAAGTTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCTGATGGGGTTGACAAGGATGGCAAGCCTCACAAGCTGAGATTGTATTCTATTGCTAGCAGTGCCCTTGGTGATTTTGGAGACTCCAAAACTGTTTCTTTATGCGTGAAACGTCTTGTGTACACAAATGAAAACGGAGAACTTGTCAAGGGAGTTTGCTCGAATTTCTTGTGCGACTTGAAGCCAGGGGCTGAAGTAAAGATTACTGGACCTGTTGGTAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCATGATCATGTTGGCAACTGGAACTGGAATTGCCCCATTCCGCTCATTTTTATGGAAAATGTTCTTCGAGAAGCATGATGATTACAAGGAAGATGATATGCATCATGCATCTACTACCATTTGGTGTCTGAGATGGGAAGGCTTATAG 783 0.4406 MAAVVTAAVSFPSSKSTSLPSRTSIAAPDRIVFKKVSLQYRDVSISGRIVSIRAQVTTEAPAKVEKESKKQEEGVIVNKFKPKNPYTARCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIPDGVDKDGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATMIMLATGTGIAPFRSFLWKMFFEKHDDYKEDDMHHASTTIWCLRWEGL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01258 260 Gene3D Translation factors 53 199 - -
Cca06g01258 260 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 83 205 IPR017927 GO:0016491
Cca06g01258 260 PANTHER FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME 1, CHLOROPLASTIC 1 242 - -
Cca06g01258 260 PIRSF Frd-NADP+_RD 1 253 IPR015701 GO:0016491
Cca06g01258 260 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 203 241 IPR039261 -
Cca06g01258 260 Pfam Oxidoreductase NAD-binding domain 215 239 IPR001433 GO:0016491
Cca06g01258 260 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 IPR001709 GO:0016491
Cca06g01258 260 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 178 187 IPR001709 GO:0016491
Cca06g01258 260 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 141 148 IPR001709 GO:0016491
Cca06g01258 260 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 118 128 IPR001709 GO:0016491
Cca06g01258 260 PANTHER - 1 242 IPR015701 GO:0016491
Cca06g01258 260 Gene3D - 200 255 IPR039261 -
Cca06g01258 260 SUPERFAMILY Riboflavin synthase domain-like 62 206 IPR017938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01258 Cca-Chr6 27069839 27073508 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01258 K02641 - gmx:100802032 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01258 06 27069839 27073508 Cca06g01258 06 27069839 27073508 ECH