Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01256 ATGCCTCAATTCTCACATCACCGATACCCTTCTCAAGCTCTCTTCGCCTTCCTTCTCTTCCTCGTATCCAGAGGGGTTTCAGGGGCAACATTTACTTTCGTGAACAAGTGCGATTACACGGTGTGGCCAGGGATTTTAGGAACACCAGAAATCGGAGCCACAGGCTTCGAACTCACCAAAGGAAGTTCCAGAAGCTTCCAGGCTCCGACCGGCTGGTCCGGTAGATTCTGGGGCAGAACCGGTTGCCAATTCGACGCTTCCGGCAACGGAACCTGCGCCACCGCGGACTGCGGCTCCGGGAAGGTCAGCTGCAACGGCGCCGGAGCCTCCCCGCCGGCCACCCTCGCCGAGTTCACCCTCGGCACGGGCTCCATGGACTACTACGACGTCAGCCTCGTCGACGGGTACAACCTGCCGATGACGGTGTTGAGAGTGGAGGGCGGCGGCGCCTGCCAGAGCGCGTGCGGCGCGTTTGGGAAAGCTGAGTATTGCTGCAACGGTGCGTTTAGTAACCCTTCCACGTGTAAGCCTTCTGTGTACTCGCAAATTTTCAAGTCCGCATGTCCCAAAGCCTATAGTTATGCCTACGATGATGCCACCAGCACCTTCACGTGTTCCGGCGCTGACTACACCATCACATTTTGTACCTCTTCACCCAGTTTAAAGTCTTCCACGGATTCGAGTCCAATGGGAACAGATTCGGGTTCTTCGGTCGAGCAATCTGAATTAGCTTCTACTTCGTggctagcggacatggctacggctacggctacggctacAGGGGGTGCGACCCAAACACGGCCTTATGAAAATGGCGACAAGAGGCAAGAGCTGAGAAAGAACTATTAA 849 0.5324 MPQFSHHRYPSQALFAFLLFLVSRGVSGATFTFVNKCDYTVWPGILGTPEIGATGFELTKGSSRSFQAPTGWSGRFWGRTGCQFDASGNGTCATADCGSGKVSCNGAGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMTVLRVEGGGACQSACGAFGKAEYCCNGAFSNPSTCKPSVYSQIFKSACPKAYSYAYDDATSTFTCSGADYTITFCTSSPSLKSSTDSSPMGTDSGSSVEQSELASTSWLADMATATATATGGATQTRPYENGDKRQELRKNY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01256 282 MobiDBLite consensus disorder prediction 258 282 - -
Cca06g01256 282 PIRSF PR5 143 260 IPR001938 -
Cca06g01256 282 PIRSF PR5 2 152 IPR001938 -
Cca06g01256 282 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 16 142 - -
Cca06g01256 282 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 143 233 - -
Cca06g01256 282 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Cca06g01256 282 PRINTS Pathogenesis-related protein signature 206 215 IPR001938 -
Cca06g01256 282 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Cca06g01256 282 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Cca06g01256 282 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cca06g01256 282 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Cca06g01256 282 SMART tha2 31 216 IPR001938 -
Cca06g01256 282 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Cca06g01256 282 SUPERFAMILY Osmotin, thaumatin-like protein 29 216 IPR037176 -
Cca06g01256 282 ProSiteProfiles Thaumatin family profile. 28 215 IPR001938 -
Cca06g01256 282 CDD TLP-PA 30 215 - -
Cca06g01256 282 Pfam Thaumatin family 149 215 IPR001938 -
Cca06g01256 282 Pfam Thaumatin family 35 143 IPR001938 -
Cca06g01256 282 Gene3D Thaumatin 148 215 IPR037176 -
Cca06g01256 282 Gene3D Thaumatin 29 147 IPR037176 -
Cca06g01256 282 PANTHER OS03G0233200 PROTEIN 16 142 IPR001938 -
Cca06g01256 282 PANTHER OS03G0233200 PROTEIN 143 233 IPR001938 -
Cca06g01256 282 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01256 Cca-Chr6 27038082 27042264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01256 15 259 Receptor kinase-like Gene Family AT5G38280 41.259 3.00e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01256 - - gmx:100815652 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01256 06 27038082 27042264 Cca06g01256 06 27038082 27042264 ECH