Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01253 ATGGTGCTCGAGGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGGGATTACTCTCCTGCTCGATTTCAAGCTCAAGCAGACGCTGTCAATCTCATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACAGTGGGAGTTCTCACAATGGCAGGGAAAGGCGTTCGTGTTTTGGTCACCCCTACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGGATTCAGGTGGCACAATTAGCTCTTAAGCATCGGCAAAATAAAAAGCAACAGCAGAGGATTATTGTCTTTGCTGGAAGTCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATTGGGAGAAAGTTGAAAAAGAATAGTGTTGCACTTGATATTGTTAATTTTGGTGAAGAAGATGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTGCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACACCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTtgctgctgctgctgctgcagcagcagctggtggtgTATCTGGATTTGAGTTTGGTGTGGATCCAAACTTGGATCCCGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCCAGGCAAGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTGCCAAACAAGAGAAGGGAGGTGAGCAGCCAGCCAGCTCACAAGACGCAACAATGACTGAGCGTGCCAGTGCAGCAACATCTGAAGCTGAGAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTACAGCAGGCACTAGCAATGTCAATGGATGATCCTGCCATTAGCCATGATGTAAAAGATACAGATATGTCAGAAGCATCTGCAAGTGACCCTGAGTTGGCTCTAGCTCTCCAAATGTCAATAGCAGATAGTACAAAGGATCAAGCAAGCCAGTCGGACATGAGCAAATTGTTGGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCACTTCCTGGGGTTGACCCGAATGACCCTTCTGTCAAGGATTTGCTGGCCTCCATGCAAAATCAGTCTGAGCCTCAACAGAAGAATGACGACAAGCCATCAAACGAGGAGGAGAAGAAGTAA 1218 0.4417 MVLEATMICIDNSEWMRNGDYSPARFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLAAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGEQPASSQDATMTERASAATSEAENKTTDLMDDENALLQQALAMSMDDPAISHDVKDTDMSEASASDPELALALQMSIADSTKDQASQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNDDKPSNEEEKK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01253 405 MobiDBLite consensus disorder prediction 365 405 - -
Cca06g01253 405 SMART uim 292 311 IPR003903 -
Cca06g01253 405 SMART uim 324 343 IPR003903 -
Cca06g01253 405 SMART uim 222 241 IPR003903 -
Cca06g01253 405 MobiDBLite consensus disorder prediction 379 393 - -
Cca06g01253 405 MobiDBLite consensus disorder prediction 242 258 - -
Cca06g01253 405 Pfam Ubiquitin interaction motif 326 340 IPR003903 -
Cca06g01253 405 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Cca06g01253 405 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Cca06g01253 405 Coils Coil 232 257 - -
Cca06g01253 405 MobiDBLite consensus disorder prediction 260 284 - -
Cca06g01253 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Cca06g01253 405 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Cca06g01253 405 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Cca06g01253 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 405 - -
Cca06g01253 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 405 - -
Cca06g01253 405 SMART VWA_4 2 175 IPR002035 -
Cca06g01253 405 MobiDBLite consensus disorder prediction 242 289 - -
Cca06g01253 405 CDD VWA_26S_proteasome_subunit 1 188 - -
Cca06g01253 405 SUPERFAMILY vWA-like 4 175 IPR036465 -
Cca06g01253 405 Gene3D - 220 306 - -
Cca06g01253 405 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01253 Cca-Chr6 27017101 27021623 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01253 K03029 - gmx:100814594 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01253 06 27017101 27021623 Cca06g01253 06 27017101 27021623 ECH