Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01252 ATGGCAAAGAGAGTGGTCATAGTTTCATCTGAGTGTTTCTGTGTTATCCTTCTGCTTTATTTATGTGGCACAGTAATATGTGTTAAGTACAATACAGGTGCAAGTGTAATGCCAGGAAAATTGAATGTTCATTTAGTTGCTCATTCCCATGATGATGTTGGTTGGCTAAAAACCGTTGATCAATACTATGTTGGGTCCAACAACAGTATTATAAGTGCATGTGTGGAGAATGTGTTGGACTCGGTGGTTACGGCCCTGCAGCGTAACCAAAATAGAAAGTTTGTGTTCGCTGAGATGGCGTTTTTCCATAGATGGTGGATGGAACAAACTCCACAAACACAGGCACAAGTGAGAAAGCTTGTGGATGCTAGCCAGCTAGAATTTATAAATGGTGGTTGGTGCATGCATGATGAAGCCACAACCCACTACATAGACATGATTGATCAAACCACTCTTGGTCACCGCTTCATCAAAAACCAATTCAACAAGGTCCCTCGTGCAGGTTGGCAGATTGACCCCTTTGGACACTCTGCTGTTCAAGCTTACTTGCTCGGTGCTGAGCTTGGCTTTGACTCTCTGCATTTCGCTAGGATTGATTATCAGGACAGAGCTAAGCGCAAAGTTGATAAGACTCTTGAAGTTGTGTGGCGTGGCTCCAAGACATTCGGCTCTTCAGCTCAGATTTTTGCCAACACTTTTCCTGTTCACTATAGTCCACCAAGAGGTTTTCATTTTGAAGTCAATGATAACTTTGTCGCTGTACAGGATGATCCTCTTCTGTTTGATTACAATGTTGAACAACGAGTCAAGGATTTCATTGCTGCTGCCATTACACAAGCAAATGTGACCAGGACCAACCATATCATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCAGAGACTTGGTTCAAGCAAATGGATAAACTAATTCACCATGTTAATAAGGATGGCAGAGTGAATGCTTTATATTCTACTCCATCTATTTACACCGATGCAAAAAATGCTGCAAATCAACTGTGGCCACTGAAAACTGATGATTACTTCCCGTATGCGGATGGAGTTAATGCTTATTGGACAGGATATTTCACTAGTCGCCCTGCCTTTAAGCGATATGTTAGGATCCTAAGTGGATACTATTTGGCAGCACGTCAACTTGAAGTTTTTGCTGGAAAGAAATCCACTTTAGGCCACACTTTAGACCTAGGAGATGCTCTAGGCGTTGCACAACATCATGATGCTGTCTCTGGCACTGCCATGCAACATACAACTAATGACTATGCAAAACGACTTGCTATTGGAGCCTCAAGGGCTGAGGCTGTTGTTAGTTCTTCTTTGAATTGTCTTACTAGCAAGAGATTAGGGGTTCAATGCTCAGCACATGCATCGGCATTTTCCCAGTGTCAATTACTCAATATCAGTTATTGCCCACCAACAGAAGACAGTATTCCACAAAGGAAGAGTTTGGTATTGTTGGTGTATAATCCACTTGGATGGAATCGTACTGACATTGTCAGAATACCGGTTAATGATGCTAATTTCATTGTGGAAGATTCATCGGGCAATAACATTCAAACACAATATACAAAAGTGGATAATGTTACAGCAAATTTAAGAGAATTCTACGTCAAAGCCTATGTTGGGTTGTCACCCAAACAAGCTCCGAAGTACTGGCTTCAATTTCAGGCTTCGGTACCTCCACTTGGATGGAATACGTATTTCATTTCGGATACAGCAAAAAAAGGCAAAAGCAGAAATGGACTTCCCTCACACCTCAACATTCAGAAAAATGATATCATTGAAGTAGGACCGGGAAATTTAAAACTCTCATTTTCTCCGGAGTCTGGACAACTCATACGGTTGCATAATTCCAGAACTGGTGTAGATGTACCAATTAAACAAAGTTATCTATGGTATAATAGTTCAGACGAACGTCAGGTTTCTGGTGCATATATATTTCGGCCTAAAGCTCCTCCAAATATCGTTTCCAGATCAGTGCCCGTCAAGATAATCCGGGGACCATTAGTTGATGAGGTTCATCAGAAGTTTAGTTCTTGGATTTACCAGGTTACTAGGGTTTACAAAGACAAAGAGCATGCTGAGATTGAATACACTATTGGTCCAATTCCTATAGAGGATGGAATTGGGAAAGAGGTGATCACGCAAATGACAGCAAATATGGTTACAAACAAAGAGTTTTATACTGATTCCAATGGAAGAGATTTTTTGAAACGGGTTCGAGATCATAGGGATGATTGGCCCCTTCAAGTTAATGAACCAGTTGCAGGCAACTATTATCCACTCAATCTTGGAATTTATATTAAGGATAAGAAATCTGAATTATCAGTCTTAGTTGATCGGGCCACTGGAGGAGGTAGTATCAAAGATGGTCAAGTGGAACTGATGCTTCATAGGCGCACACTCTATGATGATGGCAGAGGAGTAGAAGAACCTCTTAATGAACAAGTTTGCCAACATGATCAATGTCAAGGACTAACAGTAAGAGGAAATTATTATATGGGCATCCACAACCTCGGAGCTGGTTCACGTTGGCGCCGTACAACTGGTCAGGAAATTTATTCACCACTATTGTTGGCTTTTGCACATGAGAACATGGGAAATTGGAAGGCCTTTCATGTGACCAGAGGAACTGTAATTGACCCTAATTACAGCTTACCTCTCAATGTTGCTCTGATAACTCTTGAGGAGTTGGATAATGGAATGGTGCTTCTCCGTTTAGCACATCTATATGAGTCTGGTGAAGATGCTCACCTTTCAACTTTGACCAAAGTTGAATTGAAGAAAATGTTTGCCACAAAAACGATAAAGCAGTTGATCGAGGTTAGTTTATCAGCTAATCAAGAGAAGTCAAAAATGAAGAAGAAAACATGGAATGTTGCAGGGGACAAGGGGCATGAATCTGAAGGAATTAGGGGTGGCCCTGTCAGCAATGTCAACCTTGTAATTGAGCTTGGTCCCATGGAAATACGTACTTTCCTTTTGAAATTCtaa 3015 0.4119 MAKRVVIVSSECFCVILLLYLCGTVICVKYNTGASVMPGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIISACVENVLDSVVTALQRNQNRKFVFAEMAFFHRWWMEQTPQTQAQVRKLVDASQLEFINGGWCMHDEATTHYIDMIDQTTLGHRFIKNQFNKVPRAGWQIDPFGHSAVQAYLLGAELGFDSLHFARIDYQDRAKRKVDKTLEVVWRGSKTFGSSAQIFANTFPVHYSPPRGFHFEVNDNFVAVQDDPLLFDYNVEQRVKDFIAAAITQANVTRTNHIMWTMGDDFQYQYAETWFKQMDKLIHHVNKDGRVNALYSTPSIYTDAKNAANQLWPLKTDDYFPYADGVNAYWTGYFTSRPAFKRYVRILSGYYLAARQLEVFAGKKSTLGHTLDLGDALGVAQHHDAVSGTAMQHTTNDYAKRLAIGASRAEAVVSSSLNCLTSKRLGVQCSAHASAFSQCQLLNISYCPPTEDSIPQRKSLVLLVYNPLGWNRTDIVRIPVNDANFIVEDSSGNNIQTQYTKVDNVTANLREFYVKAYVGLSPKQAPKYWLQFQASVPPLGWNTYFISDTAKKGKSRNGLPSHLNIQKNDIIEVGPGNLKLSFSPESGQLIRLHNSRTGVDVPIKQSYLWYNSSDERQVSGAYIFRPKAPPNIVSRSVPVKIIRGPLVDEVHQKFSSWIYQVTRVYKDKEHAEIEYTIGPIPIEDGIGKEVITQMTANMVTNKEFYTDSNGRDFLKRVRDHRDDWPLQVNEPVAGNYYPLNLGIYIKDKKSELSVLVDRATGGGSIKDGQVELMLHRRTLYDDGRGVEEPLNEQVCQHDQCQGLTVRGNYYMGIHNLGAGSRWRRTTGQEIYSPLLLAFAHENMGNWKAFHVTRGTVIDPNYSLPLNVALITLEELDNGMVLLRLAHLYESGEDAHLSTLTKVELKKMFATKTIKQLIEVSLSANQEKSKMKKKTWNVAGDKGHESEGIRGGPVSNVNLVIELGPMEIRTFLLKF 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01252 1004 PANTHER ALPHA-MANNOSIDASE 12 1004 - -
Cca06g01252 1004 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 896 1001 IPR041147 -
Cca06g01252 1004 Gene3D Glycoside hydrolase family 38, central domain 400 455 IPR037094 GO:0004559|GO:0006013
Cca06g01252 1004 Gene3D Glycoside hydrolase 38, N terminal domain 41 321 IPR027291 -
Cca06g01252 1004 Pfam Alpha mannosidase middle domain 358 450 IPR015341 GO:0004559|GO:0006013
Cca06g01252 1004 SUPERFAMILY Glycoside hydrolase/deacetylase 30 355 IPR011330 GO:0005975
Cca06g01252 1004 Gene3D - 601 862 - -
Cca06g01252 1004 CDD GH38N_AMII_LAM_like 41 317 - -
Cca06g01252 1004 Gene3D - 886 1004 - -
Cca06g01252 1004 Pfam Glycosyl hydrolases family 38 N-terminal domain 42 353 IPR000602 GO:0004559|GO:0006013
Cca06g01252 1004 SUPERFAMILY Galactose mutarotase-like 465 1004 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca06g01252 1004 Gene3D - 468 579 IPR013780 -
Cca06g01252 1004 SMART Alpha_mann_mid_2 358 432 IPR015341 GO:0004559|GO:0006013
Cca06g01252 1004 Gene3D Glycoside hydrolase family 38, central domain 322 399 IPR037094 GO:0004559|GO:0006013
Cca06g01252 1004 SUPERFAMILY Families 57/38 glycoside transferase middle domain 357 452 IPR028995 -
Cca06g01252 1004 Pfam Glycosyl hydrolases family 38 C-terminal domain 605 814 IPR011682 GO:0004559|GO:0006013
Cca06g01252 1004 PANTHER ALPHA-MANNOSIDASE 12 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01252 Cca-Chr6 26999829 27013388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01252 8 959 Glycoside Hydrolase AT3G26720 59.401 0.0 1176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01252 K01191 - gmx:100806041 1823.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01252 06 26999829 27013388 Cca06g01252 06 26999829 27013388 ECH