Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01250 ATGGCTTCACAAAACCCTAATCAGAGAAATTCTCTGTACCCCGAAGTAATCAATTCGAACCCCGATGCTCCCTCGCCCCTCCTCCACCCCAATCACCCACCCTCTTCGCAGCCCAACCTCTACCCTTCCGTCGACTACAACGACCTCGTCGAAAACCTCTTCCCCGACCACGCCACCGCCGCTTCCCCCACCGCGCCGCCGGAGGCCACGGAGGAGCTCCTCCTCCGGATCCCCGGCGCGATCCTCAACCTCGTCGACAAGGACTACAGCGTCGAGCTCGCGTGCGGCGACTTCTCCGTCATCCGTCTCCGGCAGGGCGACAACGCCGTCGCGGTGTACGCGCGCGTCGCCGACGAGATCCAGTGGCCGCTGGCGAAGGACGAGACCGCCGTCAAAGTCGACGACTCGCACTACTTCTTCTCGTTCCGCGTCCCCAAGGGTTCCGATCCCGATGAGGACGAAGAGGATCTTCTGAGCTACGGGTTAACGATCGCGTCGAAGGGGCAAGAGGCGCTGCTGAAGGAGCTCGACGCGGTTTTGCAGAGCTGCAGCTGCTTCTCCGTGCAGAGGGTTTCGGAGAGTGCGAAGAAGAAAGGGGAGGCTCTGGATGGGTCGGTGGCGAGGGAGGTTTCGCCGAAGGATTTGGAGTCGGGGAAGAAGAAGGAGATGATGGAGGAGCGGTGCGCAGCGTATTGGACCACGCTGGCGCCTAATGTAGAGGATTATAGTGGAACTGCGGCGAGGATGATCGCTGCGGGGTCTGGACAATTGGTTAAGGGGATATTGTGGTGTGGGGATGTGACTGTGGACAGGTTGAAGTGGGGGAATCAGATTATGAAGAAGAGGATGGCTCCTGGTTCACATGCTGAGGTTAGTCCTCAGACCTTGAAGCGGATTAGAAGGGTTAAGAGAGTTACTAAAATGACAGAAAAAGTAGCAAATGGTTTCCTCTCTGGGGTCGTGAAAGTGTCTGGATTTTTCACCAGTTCTGTGATAAACTCAAAAGCCGGAAAGAAATTTTTCAGCCTTCTACCGGGGGAAGTTCTGCTTGCATCATTGGATGGATTCAGTAAAGTGTGCGATGCTGTTGAGGTAGCTGGAAAAAATGTCATGTCCACATCATCCACTGTCACAACCGAGCTTGTTGATCACAGATATGGAGAACAAGCAGCTGAAGCAACAAGTGAAGGGTTTAGTGCTGCTGGTCATGCTTTGGGTACCGCGTGGGCTGCTTTTAAGATTAGGAAGGCTATCAACCCTAAAAGTGTTCTTAAACCTACCGCCCTTGCCAAAGCTGGTGCTAAAGCTGCAGCTTCTGAATTTAAGGGTAAAAAATCCAAGTAA 1344 0.5439 MASQNPNQRNSLYPEVINSNPDAPSPLLHPNHPPSSQPNLYPSVDYNDLVENLFPDHATAASPTAPPEATEELLLRIPGAILNLVDKDYSVELACGDFSVIRLRQGDNAVAVYARVADEIQWPLAKDETAVKVDDSHYFFSFRVPKGSDPDEDEEDLLSYGLTIASKGQEALLKELDAVLQSCSCFSVQRVSESAKKKGEALDGSVAREVSPKDLESGKKKEMMEERCAAYWTTLAPNVEDYSGTAARMIAAGSGQLVKGILWCGDVTVDRLKWGNQIMKKRMAPGSHAEVSPQTLKRIRRVKRVTKMTEKVANGFLSGVVKVSGFFTSSVINSKAGKKFFSLLPGEVLLASLDGFSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGFSAAGHALGTAWAAFKIRKAINPKSVLKPTALAKAGAKAAASEFKGKKSK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01250 447 MobiDBLite consensus disorder prediction 1 40 - -
Cca06g01250 447 PANTHER SPARTIN 153 447 IPR045036 -
Cca06g01250 447 PANTHER SPARTIN 1 149 IPR045036 -
Cca06g01250 447 Pfam Senescence domain 249 435 IPR009686 -
Cca06g01250 447 MobiDBLite consensus disorder prediction 1 18 - -
Cca06g01250 447 PANTHER SENESCENCE/DEHYDRATION-ASSOCIATED-LIKE PROTEIN 1 149 - -
Cca06g01250 447 PANTHER SENESCENCE/DEHYDRATION-ASSOCIATED-LIKE PROTEIN 153 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01250 Cca-Chr6 26985742 26993137 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01250 K19366 - gmx:100804971 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01250 06 26985742 26993137 Cca06g01250 06 26985742 26993137 ECH