Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01242 ATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGACGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGATTATGTGCCGACTGTTTTTGACAACTTCAGCGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCGGATGTTTTCATACTGGCTTTCTCTCTCATAAGTAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATAATTCTGGTTGGCACAAAGCTCGACCTTCGGGATGATAAGCAGTTCTGCATTGACCATCCTGGTGCCGTGCCTATTACCTCAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCAGCTTACATCGAATGCAGTTCGAAATCACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAAAAGAAAAAGAAGGGTAAAGCACAAAAGGCCTGTTCAATATTGTGA 594 0.4562 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITSAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01242 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Cca06g01242 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Cca06g01242 197 CDD Rop_like 6 178 - -
Cca06g01242 197 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 197 - -
Cca06g01242 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Cca06g01242 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Cca06g01242 197 SMART rab_sub_5 7 180 - -
Cca06g01242 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Cca06g01242 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Cca06g01242 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Cca06g01242 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Cca06g01242 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Cca06g01242 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Cca06g01242 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Cca06g01242 197 Gene3D - 5 192 IPR027417 -
Cca06g01242 197 SMART ras_sub_4 4 180 - -
Cca06g01242 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Cca06g01242 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01242 Cca-Chr6 26910757 26913515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01242 7 180 EF-hand Containing Proteins AT5G27540 25.862 1.53e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01242 K04392 - gmx:100808748 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00256 07 3227811 3230194 Cca06g01242 06 26910757 26913515 ECH
Cca06g01242 06 26910757 26913515 Cca06g01242 06 26910757 26913515 ECH